PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G347900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TCP

Protein Properties

Length: 308aa MW: 33452 Da PI: 7.4712

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G347900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.3	3.9e-40	59	153	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+p+i+++tgt++++as+ ++sss+s++ +s + Aqcoe5G347900.1.p 59 APKRTSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQHAEPSIIAATGTGTIPASALVQSSSSVSQQGNSVSvglqt 150 789******************************************************************99955555555554554456654 PP TCP 89 ..k 89 + Aqcoe5G347900.1.p 151 kiS 153 430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-31	63	290	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.644	65	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDDLKNSSKQ PQEVVTSFLR HSSQQEMGGG GGENKQTEIR DLQISTVVAD KDGGKKQLAP 60 KRTSNKDRHT KVDGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ HAEPSIIAAT 120 GTGTIPASAL VQSSSSVSQQ GNSVSVGLQT KISELGHEIG SSSSRTNWNL VRSPVTTSLW 180 PSVSGYVPGF HPSSGQPTSN LSSDGLNYLP KFGIHGFEMP GSNLGTMNLN SFMGVGNNQQ 240 LPGLELGLSQ DVHTGVLNPQ ALQFYQQMVQ SRGVVMHQQQ QHQQQQQQQQ QQQPHDDDED 300 DSQGSRH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249094.1	1e-117	PREDICTED: transcription factor TCP20-like
Refseq	XP_010249095.1	1e-117	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	2e-71	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2G5E5I7	0.0	A0A2G5E5I7_AQUCA; Uncharacterized protein
STRING	Aquca_011_00080.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G347900.1.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]