PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G353100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

CAMTA

Protein Properties

Length: 1008aa MW: 113126 Da PI: 6.0911

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G353100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169.5	5.2e-53	12	128	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 ++e + rwlk+ e++ iL+n+ h+lt+++ ++p sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e +p Aqcoe5G353100.1.p 12 VQEaHYRWLKPAEVLFILQNHGDHQLTETPLQKPLSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEVTP 103 566689************************************************************************************ PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 +fqrr+yw+L+ ++e+ivlvhy+e Aqcoe5G353100.1.p 104 NFQRRSYWMLDPAYEHIVLVHYREI 128 ********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.241	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.3E-74	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.0E-46	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.9E-10	447	534	IPR013783	Immunoglobulin-like fold
CDD	cd00102	2.66E-4	451	534	No hit	No description
Pfam	PF01833	3.7E-7	452	534	IPR002909	IPT domain
SuperFamily	SSF81296	8.82E-19	452	534	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	4.7E-15	639	733	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.91	641	733	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.35E-15	644	735	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.32E-14	646	733	No hit	No description
Pfam	PF12796	1.1E-7	647	734	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.499	674	706	IPR002110	Ankyrin repeat
SMART	SM00248	0.0057	674	703	IPR002110	Ankyrin repeat
SMART	SM00248	1800	713	742	IPR002110	Ankyrin repeat
SMART	SM00015	20	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.943	792	818	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.37E-6	837	897	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.62	849	871	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.187	851	879	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0082	852	870	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.019	872	894	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.48	873	898	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.3E-4	875	893	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MQSPGYDIKE LVQEAHYRWL KPAEVLFILQ NHGDHQLTET PLQKPLSGSL FLFNKRVLRF 60 FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE VTPNFQRRSY WMLDPAYEHI 120 VLVHYREINE GRLRSASNSQ GSPGLSYTSS QSPSFSSAYH PAAASEQHDA YVSSFSPESV 180 EVSSEIVSRN KIMGQMNGES RVGDLGRLPK VEVGQALRRL EEQLSLNDDD IEELFPRYGQ 240 NNNNLELLGS ERTSYQDELA VRTSIESRSE LQHVGPQEDS KSDLFVQVSG DNGKQHLQHV 300 GPEYKIERKD TPFWKETLEL CSDYTWTNLE EKSLNTSERS PQKWTPHWLD LRSNNAENKN 360 EYISTSENSF SQQLSEAKHF LLGSDDAIVS PTVPSLPQEY ESYETNASPF TLSSCGENSD 420 HYKNVFELES QPTYSHRSDV NLPPAQTHKF SIQEISPEHG YTTENTKVII TGYFLCDPST 480 CAWACMFGDI EVPVQIVQEG VLRCHAPPNI PGKVSLCITS GNRVSCSEVR EFEYFVRPSS 540 CSNGYSSEKE STWSTEELLL LVRLAHMLLS DSLVQKNNKV ELGICKEDPW ELVIEDLLVG 600 TATPSGTTDW ILQELLKDKL QQWLSSKYQE GNTSSCSLSR KEQGIIHMAA GLGFEWALIP 660 ILNSGVSINF RDINGWTALH WAARFGREKM VASLVASGAS ALAVTDPTSQ DPSGKTPGII 720 AAASGHKGLA GYLSELALTS HLSSLRLEES EISKGSAVVE AERTVESISK GSLGSTEDQL 780 SLKDSLAAVR NAAQAAARIQ SAFRAHSFRR RQQIESSTGA YDENGITQDD IYGLSNASKL 840 AFRNLRDHSV DKAALSIQKK YRGYKGRKDF LAIRQKVVRI QAHVRGYQVR KKYVFLWAVG 900 VLDKVVLRWR RRGPGLRGFR PETGCIEDTE DEDILKVFRK QKVDVAIEEA VSQVLSMVES 960 PDARQQYRRM LESYRQAKAE SSGSHRETEL ISLVCADMEA DDELYMT*

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MQSPGYDIKE LVQEAHYRWL KPAEVLFILQ NHGDHQLTET PLQKPLSGSL FLFNKRVLRF  60
FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE VTPNFQRRSY WMLDPAYEHI  120
VLVHYREINE GRLRSASNSQ GSPGLSYTSS QSPSFSSAYH PAAASEQHDA YVSSFSPESV  180
EVSSEIVSRN KIMGQMNGES RVGDLGRLPK VEVGQALRRL EEQLSLNDDD IEELFPRYGQ  240
NNNNLELLGS ERTSYQDELA VRTSIESRSE LQHVGPQEDS KSDLFVQVSG DNGKQHLQHV  300
GPEYKIERKD TPFWKETLEL CSDYTWTNLE EKSLNTSERS PQKWTPHWLD LRSNNAENKN  360
EYISTSENSF SQQLSEAKHF LLGSDDAIVS PTVPSLPQEY ESYETNASPF TLSSCGENSD  420
HYKNVFELES QPTYSHRSDV NLPPAQTHKF SIQEISPEHG YTTENTKVII TGYFLCDPST  480
CAWACMFGDI EVPVQIVQEG VLRCHAPPNI PGKVSLCITS GNRVSCSEVR EFEYFVRPSS  540
CSNGYSSEKE STWSTEELLL LVRLAHMLLS DSLVQKNNKV ELGICKEDPW ELVIEDLLVG  600
TATPSGTTDW ILQELLKDKL QQWLSSKYQE GNTSSCSLSR KEQGIIHMAA GLGFEWALIP  660
ILNSGVSINF RDINGWTALH WAARFGREKM VASLVASGAS ALAVTDPTSQ DPSGKTPGII  720
AAASGHKGLA GYLSELALTS HLSSLRLEES EISKGSAVVE AERTVESISK GSLGSTEDQL  780
SLKDSLAAVR NAAQAAARIQ SAFRAHSFRR RQQIESSTGA YDENGITQDD IYGLSNASKL  840
AFRNLRDHSV DKAALSIQKK YRGYKGRKDF LAIRQKVVRI QAHVRGYQVR KKYVFLWAVG  900
VLDKVVLRWR RRGPGLRGFR PETGCIEDTE DEDILKVFRK QKVDVAIEEA VSQVLSMVES  960
PDARQQYRRM LESYRQAKAE SSGSHRETEL ISLVCADMEA DDELYMT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026385470.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2G5E5N3	0.0	A0A2G5E5N3_AQUCA; Uncharacterized protein (Fragment)
STRING	Aquca_011_00130.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Aqcoe5G353100.1.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]