PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G354500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 617aa    MW: 72006.4 Da    PI: 7.8173
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G354500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.13.6e-2963154190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 
                        +fYn+YA +vGFsvrks++++s+ ++eit rtf+Cs +g r++++k+ +++ r+ a +rtgCka++ ++k+k   +kw vt +++ HnH l+
  Aqcoe5G354500.1.p  63 NFYNRYAGQVGFSVRKSSTYRSRITKEITGRTFCCSLQGLRDSRSKNFKERMRNAADSRTGCKAMMAIQKKKtgGEKWIVTIVVEAHNHILV 154
                        6**********************************************9999*******************999999*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2563154IPR004330FAR1 DNA binding domain
PfamPF105512.6E-32276370IPR018289MULE transposase domain
PROSITE profilePS5096610.274533571IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-7545567IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-5546573IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVENGCGHEG ESSEINYNST NLDDIQEKID EIINDNDKKD EENTNGYCPC IGMEFDLEND  60
AYNFYNRYAG QVGFSVRKSS TYRSRITKEI TGRTFCCSLQ GLRDSRSKNF KERMRNAADS  120
RTGCKAMMAI QKKKTGGEKW IVTIVVEAHN HILVTPTKIY LLRSQRKMEP IQKKMADDMR  180
SVGIRTSLMV DFLASEAGGI QNVGFTRKDV NNYLSAKRQK ELLDGDAQAL LDHLQQQQLD  240
NPSFSYSIQV DSDGRMTNFF WADARSRMDY HYFGDVVCFD PTYGTNRYPM PFVPIVGVNH  300
HSQTVLFGGA LLYSETEESF EWVMRTWMNA MNDKQPKVIL TDQESSIGGA IARVLPESRH  360
RFCVWHINRN VLKHLAHEIN KHKGFLEDLN YCLYQYETVE EFENAWNKML EKYRLEDNKW  420
LESLFRKREK WASVYARDIF CVGMYTTQMS ESINSYFDRY LKRGLSLSEF MRQYKRAVVA  480
RREEENKADY NTNYHRPFLR EQLFKGLSYR HRKVEENETR LIYNVWKEGH EDVARTIVFE  540
PSTTSAKCSC QLFEFGGYLC RHILKVFMVE DVQNLPEQYI LKRWTKDAKS GSVVSSENKS  600
NQVKLEESVT SRYCRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-140FAR1-related sequence 5