PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G374900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 336aa    MW: 38518.6 Da    PI: 6.2001
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G374900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.41.5e-2667148286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W ++e+++Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++e++     s +++y+++le
  Aqcoe5G374900.2.p  67 WIQDETRCLIGLRREMDCLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQERGS---GSAKIAYYKELE 148
                        ********************************************************************84...455899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-458128IPR009057Homeodomain-like
PROSITE profilePS500908.23559123IPR017877Myb-like domain
CDDcd122031.13E-2665130No hitNo description
PfamPF138372.1E-2166150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MYLSDKPTPI DFYKEEGREM MIEVLGNGGL QLQQQSQPHQ QQQQLILADS SGEDHEMKAP  60
KKRAETWIQD ETRCLIGLRR EMDCLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR  120
NLLKEFKKAK HQERGSGSAK IAYYKELEEL LKERIKHGPC KSPTTSKVDS YVQFSDRGPD  180
DANMPFGPVE GGDANSFGGR VITVKWGDFI KRIGIDGTSE AIKEAIKSTF GLRTRRAFWL  240
EDEDGIVRCL DREMPLGIYA LHLDEGITIK ICIYDEADRI HVRTEENTLY TEDDFRDFLG  300
RRGWTGLREL SGFRSVDTLD ELRPGAMYQG VRMGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-4861146186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248872.10.0PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX531e-144TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2G5E6H70.0A0A2G5E6H7_AQUCA; Uncharacterized protein
STRINGAquca_011_00297.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.21e-144Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]