PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G377300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 257aa    MW: 29636.1 Da    PI: 6.284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G377300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-141461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W+ eEd +l + +   G+ +W+ ++++ g+ R++k+c++rw +yl
  Aqcoe5G377300.1.p 14 RGPWSIEEDYKLMNFIINNGTQCWRMVPKHAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
2Myb_DNA-binding53.74.7e-1767110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Aqcoe5G377300.1.p  67 RGPLSEVEEDQIIQLHARLGNR-WSKIAEHFP-GRTDNEIKNHWNT 110
                        78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.478961IPR017930Myb domain
SuperFamilySSF466891.05E-2711108IPR009057Homeodomain-like
SMARTSM007175.2E-81363IPR001005SANT/Myb domain
PfamPF002493.8E-121461IPR001005SANT/Myb domain
CDDcd001671.76E-51661No hitNo description
PROSITE profilePS5129426.15562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2565116IPR009057Homeodomain-like
SMARTSM007173.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1567110IPR001005SANT/Myb domain
CDDcd001676.60E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRQPCCEKI GLKRGPWSIE EDYKLMNFII NNGTQCWRMV PKHAGLLRCG KSCRLRWINY  60
LRPDLKRGPL SEVEEDQIIQ LHARLGNRWS KIAEHFPGRT DNEIKNHWNT RIKRRLTLLG  120
LDPFTHKPLE QSAEHATKSE QTSYSNGDDK EPQVESELYP VAEKNHEEIA LDTNDTVNLF  180
QSYEMLWENL SMDSKVHSET SSSNNNSPSF STGDSNSHAI CENSFMHEAS QNWIHSVDSF  240
LLWDGFRPQG DLSTWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250867.11e-101PREDICTED: myb-related protein 315-like isoform X1
RefseqXP_010250868.11e-101PREDICTED: myb-related protein 315-like isoform X1
RefseqXP_019052558.11e-101PREDICTED: myb-related protein 315-like isoform X1
RefseqXP_019052559.11e-101PREDICTED: myb-related protein 315-like isoform X1
RefseqXP_019052560.11e-101PREDICTED: myb-related protein 315-like isoform X1
RefseqXP_019052561.11e-101PREDICTED: myb-related protein 315-like isoform X1
SwissprotP813941e-75MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2G5E6M00.0A0A2G5E6M0_AQUCA; Uncharacterized protein
STRINGAquca_011_00322.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-79myb domain protein 43
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]