PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G381500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 522aa    MW: 58506.7 Da    PI: 6.6208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G381500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-12162187126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f++rtG C +G++CkF+H+
  Aqcoe5G381500.1.p 162 PGQPDCSFYLRTGSCGFGSNCKFNHP 187
                        5789*********************9 PP
2zf-CCCH20.11.1e-06222244527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C++++  G Ck+G  C++ H++
  Aqcoe5G381500.1.p 222 ECKYYLTPGGCKFGTACRYRHPR 244
                        7******************9995 PP
3zf-CCCH33.95.2e-11264289126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C+f++rtG Ck+  +C+F+H+
  Aqcoe5G381500.1.p 264 PGERECPFYMRTGSCKFATSCRFNHP 289
                        5789*********************9 PP
4zf-CCCH277.8e-09407432227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Cky + C+++H++
  Aqcoe5G381500.1.p 407 GQKECQYYMQTGDCKYKSACRYHHPK 432
                        7899********************96 PP
5zf-CCCH32.71.2e-10451474225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        +++ C++f+r+G+Ck+G+ Ck+ H
  Aqcoe5G381500.1.p 451 DQVVCSHFSRYGICKFGAACKYDH 474
                        6789******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-6161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112161189IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4167186IPR000571Zinc finger, CCCH-type
SMARTSM003560.038217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901217245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5221245IPR000571Zinc finger, CCCH-type
PfamPF146080.03223243No hitNo description
SMARTSM003563.9E-5263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662263291IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-5266291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4269288IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4405432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817405433IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6407432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5408432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5448475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418449477IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5449476IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8451475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDNSEDNLLL KSHTQEEGEK KKKKKEASSS SSSSLIVSSD DSAEIAYLEN LDKEFQNLVL  60
EEKKNQNNET TQKQLVDDEN HKEKEDLNLE QVRENRDGWS VDEEVNRDGW SVEEEDENHR  120
DGWTVVDIEQ EKVNRQGWNV EESDETVEVK GNFKKFQYPL RPGQPDCSFY LRTGSCGFGS  180
NCKFNHPLKK KHIKVRSSSE SEESIQVFEE KVGNPKRVGQ LECKYYLTPG GCKFGTACRY  240
RHPREKSVVG PPAELNFLGL PIRPGERECP FYMRTGSCKF ATSCRFNHPD PTVGVSDLGY  300
DRNSSVPLQS SSDSQQVVTS WSTPRSVTDA IAYSDPSRSY MPVMLSPRGG NSGLEWNGYQ  360
APVRPLYPSE GTLRPLAPTR NGSSKNINGY ANHLQQKPLD EFPERPGQKE CQYYMQTGDC  420
KYKSACRYHH PKTRGPKSPN LSHLGLPLRP DQVVCSHFSR YGICKFGAAC KYDHTPNSNS  480
SASPVASGSI QLPYYHNSAT YGAANMADYG DGSNALLQQS V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248777.11e-132PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A2G5E6T70.0A0A2G5E6T7_AQUCA; Uncharacterized protein
STRINGAquca_011_00360.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-93C3H family protein