PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G381600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 1545aa    MW: 172277 Da    PI: 9.118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G381600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001314291454123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                         y+C    C++ Fs+k +L+ H ++ +
  Aqcoe5G381600.1.p 1429 YQCDldGCTMGFSSKQELVLHKKNiC 1454
                         99*******************99866 PP
2zf-C2H211.10.001314541476323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         C+   Cgk F ++ +L++H r+H
  Aqcoe5G381600.1.p 1454 CSvkGCGKKFFSHKYLVQHRRVH 1476
                         77779****************99 PP
3zf-C2H211.20.001115121538123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         y+C    Cg++F+  s++ rH r+  H
  Aqcoe5G381600.1.p 1512 YVCRekGCGQTFRFVSDFSRHKRKtgH 1538
                         99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.9E-163576IPR003349JmjN domain
PROSITE profilePS5118314.6593677IPR003349JmjN domain
PfamPF023757.9E-153770IPR003349JmjN domain
SMARTSM005581.6E-48217386IPR003347JmjC domain
PROSITE profilePS5118433.982220386IPR003347JmjC domain
SuperFamilySSF511971.02E-26231382No hitNo description
PfamPF023732.8E-36250369IPR003347JmjC domain
SMARTSM003551214291451IPR015880Zinc finger, C2H2-like
SMARTSM003550.01514521476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.48714521481IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-514531480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.97E-614531488No hitNo description
PROSITE patternPS00028014541476IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-814811506IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001414821506IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.17714821511IPR007087Zinc finger, C2H2
PROSITE patternPS00028014841506IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-914921536No hitNo description
Gene3DG3DSA:3.30.160.603.3E-915071535IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3815121538IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03415121543IPR007087Zinc finger, C2H2
PROSITE patternPS00028015141538IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1545 aa     Download sequence    Send to blast
MAGNHSTIGG GGGGGGIVVA EVVHEVPQWL KNLPIAPEFH PTLAEFEDPI SYILKIEKQA  60
SQYGICKIVP PVSLSSKKTT ISNLNRSFSS PSSRYNNNNN NHIHNPNSSI SSPTFTTRFQ  120
QIGFDPRKGR PVLKPVWQSG EYYTLQQFET KAKQFEKIHL KKCGKKGGYS SLEIETLFWR  180
ASVDKPFTVE YANDMPGSAF GPVKLGKTFK ETGEGMTVGD TAWNMRGVAR SKGSLLRFMK  240
EEIPGVTSPM VYIAMLFSWF AWHVEDHDLH SLNYMHMGAS KTWYGVPKDA AFAFQEVVRA  300
HGYGGDFNPL VTFATLGEKT TVMSPEVLIG AGIPCCRLVQ NVGEFVVTFP GAYHSGFSHG  360
FNCAEASNIA TPEWLRYAKD AAIRRASVNC PPMVSHFQLL YALAMTLCSR MPMTIGDEPR  420
SSRLKDKKKG EGEGMVKEFF VQSVMQNNDL LHVLSSHGSS CVLMPRNSSE ISIYLNRRIG  480
IQKKVKRRMS LGLCSNSEAS KAARVLHPDE DTLERKMRLN QLTAFNAVND TSNSLFMEDK  540
LSSLAVKHNH QDLCNSAIVG NDMKNNCTSQ DAVLLEQGRF PCVQCGILSY ACVAVIEPKE  600
AAAQYLMSAD CSFFNDWKAG SGVLKEESTA VTENEKILER NYTLGVGVID NDYKDDLYDF  660
SVQSGDCQVE DQEVDVASHT GPQKGISSLA LLASAYGNSS DSDEELAAPK MVVNDDDDDI  720
RTRKLLGDTN VFSPSSDLCD GFTLHTVDPS QHDGASGSIP HSSSNQGRGN EVTLRMARCT  780
SSSRRKRRWT SSEVKDRGEL TSDYPLESDV ETLVPVNMKR LKDSYRDEED VSGGVIAQST  840
EIHETDLYTN QVETDPADSI VPLSSFCSGS AFSQVPLSET TNISIQSTSM SLMHISREES  900
SRKHIFCLEH AVEVEKQLRP IGGAHILLIC HPEYPRVEAQ AKSLTQDLGI DHLWKDISYR  960
EATKEDQERI GLALDDEEAD PSNGDWSVKL GINLYYSVHL SKSPLYTKQM PYNSIIYKAF  1020
GCSSMNNPME VKVSGKVPRQ KKIVVAGKWC GKVWMSNQVH PYLVQREMVE EDPMNLLVQT  1080
TPFLRPRSKL ERKVEINQLL KEPLISGKRS APEKTTIARK LGQKKKRKFG KAATKKQKSA  1140
ELESPTQTEE ESCESDSSEK KSLRVTTTVA RKLGQMKKRN FGKVAAKKQK SPELESPTHT  1200
PEESSESDSS EKKSSPRVRA TVARKLGQLE KRKVGKVAAK KQKSPELEST QTAEDSSESD  1260
SYPSSNGRFL STWGTKRPVQ QSSVKNIRQY DSNKKVEIKG EPTMAIKLEQ KKRMFGKEAA  1320
KKPKSPQLES PTQSEEDSSE SDSSPLNNEK FLKTGRTKNE RPLLQYSRQY DSKPKIEIEG  1380
GPSTRLRRRP SKPVEESKVK PVGRKQINTK KGKKALPNSN DIKSEEADYQ CDLDGCTMGF  1440
SSKQELVLHK KNICSVKGCG KKFFSHKYLV QHRRVHLDDR PLKCPWKGCK MTFKWAWART  1500
EHIRVHTGDR PYVCREKGCG QTFRFVSDFS RHKRKTGHSV KGKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-71284077353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-71284077353Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E6S50.0A0A2G5E6S5_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_011_00361.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6