PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G383700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18671.4 Da    PI: 9.205
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G383700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.2e-101351543
                       SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       ++  r++tf  R +g+ KK +EL +LC+ +++ +i+s+ 
  Aqcoe5G383700.1.p 13 DDDSRKTTFKGRVQGLNKKLSELTTLCGLKACSVILSPY 51
                       67789*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.241161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-17184IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-12160IPR002100Transcription factor, MADS-box
CDDcd001201.49E-15359No hitNo description
PfamPF003194.3E-111153IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSRGKLKLGY IVDDDSRKTT FKGRVQGLNK KLSELTTLCG LKACSVILSP YHETPQFWPD  60
EVEARQVLTR FKSTLQQGRN NKVMNHDEFL EKKIAKVKLQ VQKQEKENCH LEMTKSMNEA  120
LQHGPDETLN FTSSKEAWEF AAFLNNQMKE LKEEIEARRN P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E6U91e-117A0A2G5E6U9_AQUCA; Uncharacterized protein
STRINGAquca_011_00381.11e-117(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-25M-type_MADS family protein