PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G403500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 214aa MW: 24032.9 Da PI: 8.5098

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G403500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1.1e-18	30	81	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t+eq++ Le +F+ ++p++++r+ +++ +g++ qVk+WFqNrR+++k+ Aqcoe5G403500.1.p 30 RHTPEQIRKLEGYFKDLPHPDEAQRKMISRDVGMEPIQVKFWFQNRRTQMKQ 81 689**********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-18	9	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-17	9	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.592	22	82	IPR001356	Homeobox domain
SMART	SM00389	6.1E-14	24	86	IPR001356	Homeobox domain
CDD	cd00086	9.28E-14	29	80	No hit	No description
Pfam	PF00046	4.5E-16	30	81	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDFAHGGGYD SGDENKPPNH KRKKSGQGHR HTPEQIRKLE GYFKDLPHPD EAQRKMISRD 60 VGMEPIQVKF WFQNRRTQMK QVQGRTENET LREENEWFRF QNATMKENMR NLMCRGCGPL 120 FGTDEQHRLF HENAMLKHER GRLAAIIAVS MEEANPELRL GLSFGPPPPS PANFPGTSAS 180 GERVNVSPIS DQGPTSSSSS SADTLKSNSC ILI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7Y0V7	5e-35	ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	2e-29	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Aqcoe5G403500.1.p