PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G405300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 740aa    MW: 85892.9 Da    PI: 8.4804
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G405300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.4e-2053140191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++YneYA++vGFs+++++++k+ ++  +i+ +t++Cs+eg+ ++ ++     r++r+e r +C ak+++k+++d+k+e+tk+  eH+Hel p
  Aqcoe5G405300.1.p  53 DYYNEYARTVGFSIKIKRTNKHrRDPSKIILQTLCCSCEGTYTKVHTP----RKKREERRFECLAKFEIKLNNDEKFELTKFTAEHTHELIP 140
                        69**************9998883555789*************998777....99***********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-1753140IPR004330FAR1 DNA binding domain
PfamPF105511.4E-33261355IPR018289MULE transposase domain
PROSITE profilePS5096610.175547579IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-7554576IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-7554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MEPEDLHHND DPINDVDVKS PNLEIQGESL GVLDTISNPK IGLTFNNVKD AYDYYNEYAR  60
TVGFSIKIKR TNKHRRDPSK IILQTLCCSC EGTYTKVHTP RKKREERRFE CLAKFEIKLN  120
NDEKFELTKF TAEHTHELIP PTCSFFLRSH RGIKSSQGGI MKKMHSSGLH PSDIYYYFCA  180
EAGGAEHVNF SQTDCNNFIQ RERVEILKKG DALCLLEYFK QKKQENKHFF YDFLTNEEGK  240
IRGIFFCDAL SRRDYALFGD VICFDTTFRT NNYNLICAPI VGVNNHGQTS IFGCGLLEGE  300
TSDAIIWMFQ TFLEVMGGKK PGTIFTDQSM AISNAISTVF PDAHHRLCIW HIFQNGAKHL  360
ANVFKEFKKT FSKRFKECIY EPETIEEYEE CWEALLKDYD LKENKWLHGL YKLREKWAQV  420
YAHAYFCAGI TTTQRSESIN KFLKAYFPSN TLLRMFADQY TKAMTCRRQT EKEAETQMRR  480
TKPILLSSWS VEHETSKVYT RKMFNVFQEE FKQILDLRMT LEEESEAIQI YKVEQLGKKR  540
KTRKLTYDLS SQSAECSCRK FQFQGILCSH ILKLFRDLDF KSLPSKYYMK RWTRSITDEV  600
VYDSYGEVIP SDIDPECTTR YSELSHLFQR LVVKGSKSAL LYSTVKSKAI QFEEELDAIA  660
TNEEECGISL DNRKDAPQYS SVPNSNENAQ LKNPPLQKKG GRGEPRTRRK SCLEKKPSKN  720
KKYLKHKGVI GSCRTTNEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A200PMW30.0A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5