PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G405600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 188aa    MW: 20368.3 Da    PI: 7.4226
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G405600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601391.6e-4310108199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC  +C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+++++l++
  Aqcoe5G405600.1.p  10 PCAACKFLRRKCMLGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISFLQREVHRLEK 101
                        7******************************************************************************************* PP

             DUF260  93 elallke 99 
                        el+++++
  Aqcoe5G405600.1.p 102 ELEAANA 108
                        **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.4759110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-4210107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASSSSSNSP CAACKFLRRK CMLGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS FLQREVHRLE KELEAANADL LRYACNEIPT  120
ALPSLPGTEM LPVISPHQRS VGFGRRIGID TGLYQTSGLQ LPYPPPWTHN SLGDSIDRVG  180
GGPGGNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-6931254129LOB family transfactor Ramosa2.1
5ly0_B3e-6931254129LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322187.22e-96protein LATERAL ORGAN BOUNDARIES
RefseqXP_011046208.12e-96PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_011046209.12e-96PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_024442234.12e-96protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML41e-69LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2G5E7Q51e-137A0A2G5E7Q5_AQUCA; Uncharacterized protein
STRINGAquca_011_00559.11e-137(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-68LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]