PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G413500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 465aa MW: 51389.1 Da PI: 8.2978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G413500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.3	3.6e-15	288	333	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k Lq Aqcoe5G413500.1.p 288 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKTLQ 333 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-18	281	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.574	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-13	288	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.34E-15	288	337	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-18	288	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-17	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MSQCVPNWDL DENSTSIRVP FHPNSNMNDA KASDVTDPTL DYEVAELTWE NGQLGLHGLG 60 PPRVIGGKPI SSKYTWEKPR ASGTLESIVN QAVQLGPCEA PIRRDEFVPW FDHQRAIGAA 120 GNMTMDALVP SSNSIHFVHN SAKRIADPNQ GVGTCVTRKS TRVESCGGTT SFERGKEREE 180 RIARKRARVQ NRVGMAREGC SRNQSVSVSE TFGRESRQVG ADSCEMDLDT GFTSTSLDSD 240 TNLNTIDDRD SVSHTRPQKQ ARTEEDNKST QNDKSTISTK RSRAAAIHNQ SERKRRDKIN 300 QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK TLQAQVHMMS RMSMPQMMMP MTMQQQLQMT 360 MMAQMGMAGM GMGMGMGGMM DHMNSIGRPN IPGMPHQVLN PAAFMSMAPW DGTNDRVPGS 420 SALMPDPMAS FLAACQTQPM TMDAYSRMGA LYQQIHQQVP NSKS*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MSQCVPNWDL DENSTSIRVP FHPNSNMNDA KASDVTDPTL DYEVAELTWE NGQLGLHGLG  60
PPRVIGGKPI SSKYTWEKPR ASGTLESIVN QAVQLGPCEA PIRRDEFVPW FDHQRAIGAA  120
GNMTMDALVP SSNSIHFVHN SAKRIADPNQ GVGTCVTRKS TRVESCGGTT SFERGKEREE  180
RIARKRARVQ NRVGMAREGC SRNQSVSVSE TFGRESRQVG ADSCEMDLDT GFTSTSLDSD  240
TNLNTIDDRD SVSHTRPQKQ ARTEEDNKST QNDKSTISTK RSRAAAIHNQ SERKRRDKIN  300
QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK TLQAQVHMMS RMSMPQMMMP MTMQQQLQMT  360
MMAQMGMAGM GMGMGMGGMM DHMNSIGRPN IPGMPHQVLN PAAFMSMAPW DGTNDRVPGS  420
SALMPDPMAS FLAACQTQPM TMDAYSRMGA LYQQIHQQVP NSKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	ERKRRD
2	292	297	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258917.1	1e-160	PREDICTED: transcription factor UNE10 isoform X3
Swissprot	Q8GZ38	1e-98	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2G5CXI1	0.0	A0A2G5CXI1_AQUCA; Uncharacterized protein
STRING	Aquca_035_00175.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-91	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G413500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]