PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G413500.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 463aa MW: 51132.8 Da PI: 8.0891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G413500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.3	3.6e-15	286	331	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k Lq Aqcoe5G413500.3.p 286 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKTLQ 331 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-18	279	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.574	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-15	286	335	No hit	No description
Pfam	PF00010	8.7E-13	286	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-18	286	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-17	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSQCVPNWDL DENSTSIRVP FHPNSNMNDA KASDVTDPTL DYEVAELTWE NGQLGLHGLG 60 PPRVIGGKPI SSKYTWEKPR ASGTLESIVN QAVQLGPCEA PIRRDEFVPW FDHQRAIGAA 120 GNMTMDALVP SSNSIHFVHN SAKRIADPNQ GVGTCVTRKS TRVESCGGTT SFERGKEREE 180 RIARKRARVQ NRVGMAREGC SRNQSVSVSE TFGRESRQVG ADSCEMDLDT GFTSTSLDSD 240 TNLNTIDDRD SVSHTRPQAR TEEDNKSTQN DKSTISTKRS RAAAIHNQSE RKRRDKINQR 300 MKTLQKLVPN SSKTDKASML DEVIEYLKTL QAQVHMMSRM SMPQMMMPMT MQQQLQMTMM 360 AQMGMAGMGM GMGMGGMMDH MNSIGRPNIP GMPHQVLNPA AFMSMAPWDG TNDRVPGSSA 420 LMPDPMASFL AACQTQPMTM DAYSRMGALY QQIHQQVPNS KS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSQCVPNWDL DENSTSIRVP FHPNSNMNDA KASDVTDPTL DYEVAELTWE NGQLGLHGLG  60
PPRVIGGKPI SSKYTWEKPR ASGTLESIVN QAVQLGPCEA PIRRDEFVPW FDHQRAIGAA  120
GNMTMDALVP SSNSIHFVHN SAKRIADPNQ GVGTCVTRKS TRVESCGGTT SFERGKEREE  180
RIARKRARVQ NRVGMAREGC SRNQSVSVSE TFGRESRQVG ADSCEMDLDT GFTSTSLDSD  240
TNLNTIDDRD SVSHTRPQAR TEEDNKSTQN DKSTISTKRS RAAAIHNQSE RKRRDKINQR  300
MKTLQKLVPN SSKTDKASML DEVIEYLKTL QAQVHMMSRM SMPQMMMPMT MQQQLQMTMM  360
AQMGMAGMGM GMGMGGMMDH MNSIGRPNIP GMPHQVLNPA AFMSMAPWDG TNDRVPGSSA  420
LMPDPMASFL AACQTQPMTM DAYSRMGALY QQIHQQVPNS KS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	294	ERKRRD
2	290	295	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582839.1	1e-158	transcription factor UNE10
Swissprot	Q8GZ38	1e-100	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2G5CWI7	0.0	A0A2G5CWI7_AQUCA; Uncharacterized protein
STRING	Aquca_035_00175.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G413500.3.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]