PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G414800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 482aa    MW: 53665.7 Da    PI: 7.029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G414800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00186102319
                        ETTTTEEESSHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                        C +Cgk F+++ ++  H
  Aqcoe5G414800.1.p  86 CANCGKEFTSWKLFLEH 102
                        99************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.51436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6831436IPR007087Zinc finger, C2H2
PfamPF139120.00111536IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576676.97E-8218241No hitNo description
SMARTSM003550.14219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388219246IPR007087Zinc finger, C2H2
PfamPF139122.5E-9219243IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SuperFamilySSF576676.97E-8300327No hitNo description
PfamPF139126.0E-12304328IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182305327IPR007087Zinc finger, C2H2
SMARTSM003551305327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAMVVDQSQP TFKHFCRICN KGFMCGRALG GHMRAHGIIG DDQNADDHQH SSDDWEDHKL  60
NGNNAPSKRM YALRTNPNRL KSCKICANCG KEFTSWKLFL EHGKCKASDD VESSFVSSPR  120
SRDDQDEAQR RECGWFKGKR TRRANVGNLN LNCPSTEEED LANCLVMLSS ARVDPVVEEV  180
VEESSCASAS REEDRRYTIF PITTNYGDKA KGMAAKGMFE CKACKKSFNS HQALGGHRAS  240
HKKVKGCFAA KLDDFDETTL IDEDVITNDE FSMRSRSNAT VPSFEHSVDL QLATSTPFKR  300
KSKVHECSIC HRIFSSGQAL GGHKRCHWIT SNSSDMSTIA KFQHFKDQNQ FHQTPIFSKS  360
SDALDLNLPA STNDKNQDPQ KDPLSLEIST AICLQSWGGV YMNDEKKNTN NDQNNNTTTT  420
TTTTHHFNPS VPNNVDEEVE SKVKLAKLND LKDLHMMSTG ESSPWLQVGI GSTSNNMASD  480
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264307.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2G5CWM10.0A0A2G5CWM1_AQUCA; Uncharacterized protein
STRINGAquca_035_00187.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.17e-25C2H2-like zinc finger protein