PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G421800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 235aa MW: 26599.2 Da PI: 8.479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G421800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.2e-12	48	97	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h e+Er+RR+++ + +++Lr+l+P+ ++K s ++ +A +Y+k+ q Aqcoe5G421800.1.p 48 VHREVERQRRQEMATLYSTLRSLVPHeY---LKGKRSISDHMNEAANYVKHQQ 97 69**********************77...9*****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-13	41	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.258	44	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	46	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-9	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.27E-9	49	101	No hit	No description
SMART	SM00353	3.3E-4	50	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MLLVDPSSEC SNPVKVDKLH HRHKRSGYLN CNGEGDKNND NNKKTKIVHR EVERQRRQEM 60 ATLYSTLRSL VPHEYLKGKR SISDHMNEAA NYVKHQQTKI KELVEERDKL QKMSNSTSDT 120 KKECSSFPNF VNVQASFAGV EIIISSGSRD RGLALSWLLV VLVEEGLSVA SCISTKANEI 180 TFHTIQAEVI NPDDFDLCGL QHKLINLSHS PVPKYLMNHR DYIDLSLAYS RSHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090357.1	2e-53	transcription factor bHLH118
TrEMBL	A0A2G5CXW4	1e-174	A0A2G5CXW4_AQUCA; Uncharacterized protein
STRING	Aquca_035_00249.1	1e-175	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G421800.1.p