PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G435400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 752aa    MW: 87389.7 Da    PI: 8.4119
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G435400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.14e-2057144191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++YneYA++vGFs+++++++k+ ++ ++++ +t++Cs+eg+ ++  +     rr+r+e r gC ak+++k++kd+k+e+tk+  eH+Hel+p
  Aqcoe5G435400.1.p  57 NYYNEYARTVGFSIKIKRTNKHrQDFDKVILQTLCCSCEGTYTKVYTP----RRRREERRFGCMAKFEIKLNKDEKFELTKFLAEHSHELVP 144
                        69*************9998887466689*************9998777....999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1657144IPR004330FAR1 DNA binding domain
PfamPF105511.8E-17281343IPR018289MULE transposase domain
PROSITE profilePS5096610.2528566IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-8541568IPR006564Zinc finger, PMZ-type
PfamPF044343.2E-6543563IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MDQNDFQNNG NPIDLHGHQA DIEETTFDIQ DEIVGVLDDK LIPKLGLLFD NVKYAYNYYN  60
EYARTVGFSI KIKRTNKHRQ DFDKVILQTL CCSCEGTYTK VYTPRRRREE RRFGCMAKFE  120
IKLNKDEKFE LTKFLAEHSH ELVPPTCSYL LRSHRGVKKS QAGIMKKMHS SGLQPSDIYY  180
YFCEEAGGAE HANFSQSDCN NLLQRECVEI LKKGDAVCLL EYFKQKKKEN KHFYYDILTN  240
EESEIRGIFF CDALSRRDYA LFGDVICFDT TFRTNNYNLV CAPIVEGETS DAIIWMFETF  300
LQVMGGKKPG TIFTDQSMTI SNAIATVFPD AHHRLCIWHI FQNGAKHLAK VFAEFKDFSK  360
QFKKCIYEPE TIEEFEEIWK KILLDFGLVD NKWLQGLYKL REKWAQVYVH ACFCAGITTT  420
QRSESINKFL KAYFPSNTLL RVFVDQYTKA MTCRRETEKE AETQMRRTAP ILISDWSNER  480
EASKVYTRKM FNLFQGEFKK TIDLRLTLES ELRTILIYKI EQLGKWKMTR TVTYNQLDQS  540
VECTCRKFQF EGILCSHVLK VFRDRDLTSL PTQYYLKRWT RGITDDVVYD SYGEVIPSDI  600
DPKCTARYND LSHIFQRLVV KGSKSDSLYS IIKSKALEFE AEVDAIAKKE EKGENNKKKR  660
KVASQNKSIP NPHEDVQLRN PPTKADRGEP KTRKKSCLEK KARKKKNDSK QMAGGDAYFV  720
GGMEEQNQPT IDTQGDQNNQ ASARRLDFSD L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1656661KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A200PMW30.0A0A200PMW3_9MAGN; FAR1 DNA binding domain
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5