PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G452200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 152aa MW: 17384.8 Da PI: 6.104

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G452200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	92	115	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C Cg+sF+ +++ ++H+++ H Aqcoe5G452200.1.p 92 CAieGCGTSFPAPESARQHLQSrH 115 77779***************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12066	4.3E-11	18	69	IPR021933	Protein of unknown function DUF3546
PROSITE pattern	PS00028	0	92	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MASDVERNPI RLGLMSYKQF IQEQEDDIQP AEAQLRFDTY VSSMYKSDYF RAHKDEGWLR 60 DKYHPVNLKT DLKVFDIKVL DSVVVKKWKS SCAIEGCGTS FPAPESARQH LQSRHPDLVL 120 KDSSDDVVNC YVKAYELFCC LVKDCGMSFV T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ax1_A	2e-15	13	68	1	59	Serrate RNA effector molecule

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Aqcoe5G452200.1.p