PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G478400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 812aa    MW: 88557.6 Da    PI: 6.153
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G478400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-30121205187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe++aL+++r++m+ ++r++ lk+plWe+vs+k++++g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Aqcoe5G478400.1.p 121 RWPRQETMALLKIRSDMDAAFRDATLKGPLWEDVSRKLAQQGYTRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 205
                        8*********************************************************************866665..*******85 PP
2trihelix108.93.3e-34541626187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+kqevlaLi++r+ +e+r++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  Aqcoe5G478400.1.p 541 RWPKQEVLALIKLRSGLESRYQEAGPKGPLWEEISTGMQRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 626
                        8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0021118180IPR001005SANT/Myb domain
PROSITE profilePS500906.655120178IPR017877Myb-like domain
PfamPF138376.3E-21120206No hitNo description
CDDcd122031.20E-25120185No hitNo description
PROSITE profilePS500907.306534598IPR017877Myb-like domain
SMARTSM007170.0027538600IPR001005SANT/Myb domain
CDDcd122036.34E-31540605No hitNo description
PfamPF138373.0E-23540627No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MQQGGAGGGG GSQYGMSPPD MTPFTAAASS TTTTTTRPHM LSDHLQQQYK SAAAGGDTSA  60
TTSMVAEAAS PISSRPPPPP GGNLEELVVP TSASGGGGFP DDEGFGGEEG ERGGLGGGGN  120
RWPRQETMAL LKIRSDMDAA FRDATLKGPL WEDVSRKLAQ QGYTRSAKKC KEKFENVHKY  180
YKRTKEGRAG RQDGKSYRFF SQLEALHTTT PTNPPPVSIG IGMVVASSAA RTQALPSDLS  240
MPAVTHTTTA SAATVQIGVS PQIITTPDLR GGLPIGGVPP SATAAGISFS SNTASSSDDS  300
QDSEDDDDDD DLLGRVPASS NTTGSRKRKR GEGSSHQGVG IRNNNSGMMD FFEGLMKQVM  360
EKQEAMQQRF LETIEKREQD RMIREEAWKR QEMARLTREH EIMAQERAIS ASRDAAIIAF  420
LQKITGQTIQ FPPPVVIPAA PPPQATTPAP SPPVQPQQQQ QQQQQQQHQS LPPQQPQPQP  480
QRHHHHNQQQ QKHQHPPHST EIVRHQPTPP HDVVVAAVPE QQHPPQEMIS GSGSFDSTSS  540
RWPKQEVLAL IKLRSGLESR YQEAGPKGPL WEEISTGMQR MGYNRSSKRC KEKWENINKY  600
FKKVKESNKK RPEDAKTCPY FHQLDALYRK KMVGGSSSST SSFGHQSKQE DSMAIDPSPA  660
PSNLQVIMPP PSQAQPSHIS EAENKNKNNK SGTGGNMEEQ QSSKEGFFEE GNSGASASAL  720
KKPEDIMKEL IEQHHHQQQH QQLVTSDYDK LEEPDSDNLD QDEEDEDDEE DEDEEESKMA  780
YKIQFQRQNA GGPSSNGGGN NAANSFLAMV Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624849.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2G5CUR80.0A0A2G5CUR8_AQUCA; Uncharacterized protein
STRINGAquca_037_00343.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-59Trihelix family protein