PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G478400.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 590aa MW: 65207.8 Da PI: 5.6812

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G478400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	109.5	2.1e-34	319	404	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+kqevlaLi++r+ +e+r++++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Aqcoe5G478400.2.p 319 RWPKQEVLALIKLRSGLESRYQEAGPKGPLWEEISTGMQRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 404 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.306	312	376	IPR017877	Myb-like domain
SMART	SM00717	0.0027	316	378	IPR001005	SANT/Myb domain
Pfam	PF13837	1.9E-23	318	405	No hit	No description
CDD	cd12203	3.25E-31	318	383	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MVVASSAART QALPSDLSMP AVTHTTTASA ATVQIGVSPQ IITTPDLRGG LPIGGVPPSA 60 TAAGISFSSN TASSSDDSQD SEDDDDDDDL LGRVPASSNT TGSRKRKRGE GSSHQGVGIR 120 NNNSGMMDFF EGLMKQVMEK QEAMQQRFLE TIEKREQDRM IREEAWKRQE MARLTREHEI 180 MAQERAISAS RDAAIIAFLQ KITGQTIQFP PPVVIPAAPP PQATTPAPSP PVQPQQQQQQ 240 QQQQQHQSLP PQQPQPQPQR HHHHNQQQQK HQHPPHSTEI VRHQPTPPHD VVVAAVPEQQ 300 HPPQEMISGS GSFDSTSSRW PKQEVLALIK LRSGLESRYQ EAGPKGPLWE EISTGMQRMG 360 YNRSSKRCKE KWENINKYFK KVKESNKKRP EDAKTCPYFH QLDALYRKKM VGGSSSSTSS 420 FGHQSKQEDS MAIDPSPAPS NLQVIMPPPS QAQPSHISEA ENKNKNNKSG TGGNMEEQQS 480 SKEGFFEEGN SGASASALKK PEDIMKELIE QHHHQQQHQQ LVTSDYDKLE EPDSDNLDQD 540 EEDEDDEEDE DEEESKMAYK IQFQRQNAGG PSSNGGGNNA ANSFLAMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MVVASSAART QALPSDLSMP AVTHTTTASA ATVQIGVSPQ IITTPDLRGG LPIGGVPPSA  60
TAAGISFSSN TASSSDDSQD SEDDDDDDDL LGRVPASSNT TGSRKRKRGE GSSHQGVGIR  120
NNNSGMMDFF EGLMKQVMEK QEAMQQRFLE TIEKREQDRM IREEAWKRQE MARLTREHEI  180
MAQERAISAS RDAAIIAFLQ KITGQTIQFP PPVVIPAAPP PQATTPAPSP PVQPQQQQQQ  240
QQQQQHQSLP PQQPQPQPQR HHHHNQQQQK HQHPPHSTEI VRHQPTPPHD VVVAAVPEQQ  300
HPPQEMISGS GSFDSTSSRW PKQEVLALIK LRSGLESRYQ EAGPKGPLWE EISTGMQRMG  360
YNRSSKRCKE KWENINKYFK KVKESNKKRP EDAKTCPYFH QLDALYRKKM VGGSSSSTSS  420
FGHQSKQEDS MAIDPSPAPS NLQVIMPPPS QAQPSHISEA ENKNKNNKSG TGGNMEEQQS  480
SKEGFFEEGN SGASASALKK PEDIMKELIE QHHHQQQHQQ LVTSDYDKLE EPDSDNLDQD  540
EEDEDDEEDE DEEESKMAYK IQFQRQNAGG PSSNGGGNNA ANSFLAMVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439158.1	1e-140	trihelix transcription factor GTL1 isoform X1
Refseq	XP_021624875.1	1e-140	trihelix transcription factor GTL1 isoform X4
TrEMBL	A0A2G5CUU8	0.0	A0A2G5CUU8_AQUCA; Uncharacterized protein
STRING	Aquca_037_00343.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G478400.2.p