PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G001700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 280aa    MW: 31694.3 Da    PI: 8.3598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G001700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.1e-50231482128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  Aqcoe6G001700.2.p  23 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIR 113
                        79***************************.89***************8778899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + + + +glkktLvfy+g+apkg +t+W+m+eyrl
  Aqcoe6G001700.2.p 114 NDNLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 148
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.26422169IPR003441NAC domain
SuperFamilySSF1019411.83E-5522169IPR003441NAC domain
PfamPF023656.0E-2524148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAIAATMSQN NDDKDNHDHD MVMPGFRFHP TEEELIEFYL RRKVEGKRFN VELITFLDLY  60
RYDPWELPAL AAIGEKEWFF YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRNDNLRSI  120
GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ QDTDRYQKAE ISLCRVYKRP GVEDHARVPG  180
SSHSSAPSSS RGTQPDKRQQ NLITYGISSF QAYDSNNSPA TTTTTTTEME KLNEADASST  240
SNDTGTALGI ANVSPMIRSA VLSQASTIEE NWGSFYGTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-552416919165NO APICAL MERISTEM PROTEIN
1ut4_B3e-552416919165NO APICAL MERISTEM PROTEIN
1ut7_A3e-552416919165NO APICAL MERISTEM PROTEIN
1ut7_B3e-552416919165NO APICAL MERISTEM PROTEIN
4dul_A3e-552416919165NAC domain-containing protein 19
4dul_B3e-552416919165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897039.11e-129NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-108NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2G5DU090.0A0A2G5DU09_AQUCA; Uncharacterized protein
STRINGAquca_014_00018.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]