PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G003100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 513aa    MW: 56976.7 Da    PI: 6.681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G003100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13365411455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aqcoe6G003100.1.p 365 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 411
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-4348225IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-14364415No hitNo description
SuperFamilySSF474591.83E-18364430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10365411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-17365425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGEKGWVSDE DKAMFESVLS SEALRFLINS SSNGGAIPKE SMVSQSVKQE LRRLVDGFNW  60
SYAILWQVSR SNSGEPNLIW GGGHCNRSNV EQQQQQEVKG FTHSQELKKK LLQYLHCLFG  120
GSANSGERLD SVSDVEFFYL TSMYYSLPFD DAPTGLAWSF ASNRTIWASD QNNCMGHYNS  180
RAFLAKSTGI RTLVCVPIQS GVVELGSINQ FPEDQSVLQM IKNVFSGSRS ITASTSASAP  240
KIFGHDLSLA KPKPRSLTIN FSPKLEEEED TEFSLVSYTN QSLVPGHSNA LVDQAFGTFS  300
NGSRIDDNSE EKLFLQGNHS CPGNLNPQPR MLSSDQSSMD VSRSDERKPR KRGRKPANGR  360
EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITYITDL QTKIRVLETE  420
KEIARNSSPQ QSPIPEIDVQ TRQEDTVVQV SCPLDAHPVS RVLRAFQETQ VTVNQSTVST  480
IDNDSVLHTF SIRTQGGASE ILKERLVAAL SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26359426269Transcription factor MYC2
5gnj_B1e-26359426269Transcription factor MYC2
5gnj_E1e-26359426269Transcription factor MYC2
5gnj_F1e-26359426269Transcription factor MYC2
5gnj_G1e-26359426269Transcription factor MYC2
5gnj_I1e-26359426269Transcription factor MYC2
5gnj_M1e-26359426269Transcription factor MYC2
5gnj_N1e-26359426269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346354RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252341.10.0PREDICTED: transcription factor bHLH3
RefseqXP_010252342.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-151MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2G5DU520.0A0A2G5DU52_AQUCA; Uncharacterized protein
STRINGAquca_014_00031.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-136bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]