PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G003200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 369aa MW: 41931.5 Da PI: 7.7331

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G003200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.1e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+++yL+kk++ +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+d Aqcoe6G003200.1.p 8 VPPGFRFHPTDEELLHYYLRKKISFQKFDL-EVIREVDLNKIEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRD 98 69**************************.99**********963433332556***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Aqcoe6G003200.1.p 99 KCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 9.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-60	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.342	8	160	IPR003441	NAC domain
Pfam	PF02365	7.1E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MASSNGGVPP GFRFHPTDEE LLHYYLRKKI SFQKFDLEVI REVDLNKIEP WDLQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATSAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDND DYQNNSGSED GWVVCRVFKK KNLFKIGGGS EGGTSMQGPT 180 THQLMNNASS NNQARALLTR DTHTQYVNRV MNQHTFDLYK PELGLQYSNN INHPADTGGI 240 HYSSLQPQTL MLQAHNNKPI GYDPQLLSNQ RDNCDSGSES LAAGGQVQYE QQGAALDHQS 300 QQMVGERDEG LNDWTMLNGL VTPHQLGHED SSSKPVVRFE DSTNASSVNQ INQQLSIRGE 360 MDFWGYAK*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MASSNGGVPP GFRFHPTDEE LLHYYLRKKI SFQKFDLEVI REVDLNKIEP WDLQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATSAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDND DYQNNSGSED GWVVCRVFKK KNLFKIGGGS EGGTSMQGPT  180
THQLMNNASS NNQARALLTR DTHTQYVNRV MNQHTFDLYK PELGLQYSNN INHPADTGGI  240
HYSSLQPQTL MLQAHNNKPI GYDPQLLSNQ RDNCDSGSES LAAGGQVQYE QQGAALDHQS  300
QQMVGERDEG LNDWTMLNGL VTPHQLGHED SSSKPVVRFE DSTNASSVNQ INQQLSIRGE  360
MDFWGYAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-52	2	162	9	170	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM466808	1e-82	AM466808.1 Vitis vinifera contig VV78X084098.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252331.1	1e-160	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-134	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2G5DU51	0.0	A0A2G5DU51_AQUCA; Uncharacterized protein
STRING	Aquca_014_00032.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-134	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Aqcoe6G003200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]