PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G007500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 22499 Da    PI: 7.3844
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G007500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien   rqvtf+kRr+g+lKKA+ELS+LCda+v viifs++gkly+ s
  Aqcoe6G007500.1.p  9 KRIENLVHRQVTFCKRRAGLLKKAKELSILCDADVGVIIFSNNGKLYDLS 58
                       79*********************************************865 PP
2K-box60.76e-21791736100
              K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         ++ ++++++++++e+a Lk+ei+ Lq+ +R   G + +++++ eL  Le++Le  + +iRs+K e+++++i+ l++ke  l+ +n++L+ k
  Aqcoe6G007500.1.p  79 VSDEDANQSSESEEEIAMLKQEIQLLQKGLRYTFGGGSGNMTVDELDLLEKHLEIWIHNIRSTKIEIMFQEIQSLKNKEGILKAANEYLQGK 170
                        4456677889999******************************************************************************* PP

              K-box  98 lee 100
                        +ee
  Aqcoe6G007500.1.p 171 IEE 173
                        987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.73161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-28173IPR002100Transcription factor, MADS-box
CDDcd002651.56E-38278No hitNo description
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.1E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2183171IPR002487Transcription factor, K-box
PROSITE profilePS5129711.97187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQMKR IENLVHRQVT FCKRRAGLLK KAKELSILCD ADVGVIIFSN NGKLYDLSTK  60
GSMQGLVERY MKSAKGAQVS DEDANQSSES EEEIAMLKQE IQLLQKGLRY TFGGGSGNMT  120
VDELDLLEKH LEIWIHNIRS TKIEIMFQEI QSLKNKEGIL KAANEYLQGK IEEQCGVLNI  180
PPTVAGCSYQ LTIPNEIFNF *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802510.0JX680251.1 Aquilegia coerulea MADS-box protein AGL12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026409316.11e-100agamous-like MADS-box protein AGL12 isoform X1
SwissprotA2YQK92e-76MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-76MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2G5DUF81e-145A0A2G5DUF8_AQUCA; Uncharacterized protein
STRINGAquca_014_00077.11e-139(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-73AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]