PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G011000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 101aa    MW: 11416 Da    PI: 4.3177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G011000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-1222942399
                       .HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH.HHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 23 aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk.angLkegDfvvFkldgrsefelvvkvfrk 99
                       +eeh +++ +s   +led+sg +W+v l  +++ ++ +l++ W +F + ++ L++g +++F++dg++ f  +v++f++
  Aqcoe6G011000.1.p 22 FEEH-LPEDSSELAILEDRSGGRWRVSL--SRTVDGLYLEDVWGSFSSdDHSLEVGYVLLFRYDGDMIF--NVMIFSS 94
                       4566.445577899**************..****************863699*************9999..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-151695IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-121695IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-92294IPR003340B3 DNA binding domain
CDDcd100172.43E-102393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSVCCNVVGL GRWIALRIRQ GFEEHLPEDS SELAILEDRS GGRWRVSLSR TVDGLYLEDV  60
WGSFSSDDHS LEVGYVLLFR YDGDMIFNVM IFSSNTMMMV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EK481e-20A0A2G5EK48_AQUCA; Uncharacterized protein
STRINGAquca_007_00469.12e-21(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-10B3 family protein