PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G022200.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 705aa    MW: 81249.7 Da    PI: 6.9983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G022200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.21.1e-2682166290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY eYA++vGF +rk+  ++sk n+e++ rt+vCs+eg + ++k+      ++r++tr +Cka++kvk+ ++gkw ++k+++eHnHel 
  Aqcoe6G022200.3.p  82 FYGEYARHVGFGIRKRFIRRSKLNNEVIGRTYVCSREGLKLSRKEV----DHPRPTTRLDCKAMMKVKRYENGKWIIIKFVKEHNHELY 166
                        9***************************************999877....99***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2382167IPR004330FAR1 DNA binding domain
PfamPF105516.0E-29280373IPR018289MULE transposase domain
PROSITE profilePS509669.817567603IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-4578602IPR007527Zinc finger, SWIM-type
SMARTSM005750.0042578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDQCRDSVAC EDGSCPVMDD IDENYTVRDC GTVEANIFSD EVEENFSIDE PIAEDPSAAE  60
NANGLDPYIS REFESEHATY LFYGEYARHV GFGIRKRFIR RSKLNNEVIG RTYVCSREGL  120
KLSRKEVDHP RPTTRLDCKA MMKVKRYENG KWIIIKFVKE HNHELYPHSA CIFQSPLINT  180
YKEAPKSAEI DVSKTPLATK RGRPKKVQPT EKNCRNLFEN EQREPLSIGD AQTLYDYFMR  240
AQVSNPRFFY AMELDEQQRM RNVFWADTKA RVDYAHFGDV VTFDTTCLTN KYETKIVSFV  300
GVNHHGQSVL LGCALVTDET KASFLWVFRT WLTVMQGGPP KAIITDHHRA IKLAIAEAFP  360
QTCHRICLGH IMRRVPEKLG KACTNNERFI YKFEKCVYDS LTAEAFERRW KKLVEANGLV  420
DHEWIQKLFE DRIQWVPVYL KDTFFAGMST SRRGESVKSF FDDYVNEKTS LKDFIDQIEL  480
ALQRSYCAEE KADLETYRRT TSLITGSPYE AQMASVYTMD IFKKFQEEIL LIPSCTAVRV  540
REDGAEVNFV VKELRIKPNG LRGVIDYEVL FNGCETKVRC VCSSFEFKGY LCRHTMVVLF  600
AVGVFDIPSR YILKRWTWDA KNIDICNGSQ DSGPEFVAKC FSDLRADSLK LAEEGSLTKE  660
RYRTAKIFLK EALMKVASME KVPVSDPNTI SKEAQRLTWQ QNEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277289.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277290.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277291.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277292.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277293.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277294.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A2G5FA700.0A0A2G5FA70_AQUCA; Uncharacterized protein
STRINGAquca_001_00371.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-146FAR1 family protein