PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G023600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 1199aa MW: 136814 Da PI: 6.7893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G023600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	207	295	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YAke GFs+rks+ ++s+ +++ ++r+fvC k+g+r+ ++k+ + k r+r +tr++C+a + +k++ +gkw+v+++++eHnH l Aqcoe6G023600.1.p 207 EYYRAYAKENGFSIRKSHVERSRVDHSLISRKFVCVKQGFRSLKDKRyEGKIVRHRRVTRVDCRAAMIIKRR-SGKWVVHRFHKEHNHGL 295 69**************************************999986778899**************.*************98 PP
2	FAR1	80.4	3.3e-25	421	510	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke GFs+rks+ ++s+ ++++++r +vC ++g r++++k+ + k r+r+etr +C+a + +k++ +g w+v+++++eHnH+l+ Aqcoe6G023600.1.p 421 EFYNAYAKEKGFSIRKSRIERSRIDHSMISRLYVCANQGLRSTKDKRyEGKIVRPRQETRLDCRAAMFIKRR-SGIWVVERFHKEHNHDLV 510 6**************************************9999986788899**************.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-23	207	295	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.0E-23	421	510	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.6E-31	641	734	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.435	923	959	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-6	931	958	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-6	934	961	IPR006564	Zinc finger, PMZ-type
SuperFamily	SSF57756	5.23E-6	1094	1121	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	4.5E-4	1103	1122	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.598	1106	1121	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence Send to blast
MNSFGFCLQS SEQTNQLIEI HSEMHNSTDQ RSPSYHAFYT PSSPPWSSFP IVSPITHSVP 60 TSASFTSAEV SSSLNAAAGE SSSVPSSDLF HLLPESETVG SVATCLPMQS TVATSPCDHP 120 QPWDMEESQQ CICLEDTIGL GREMLEPDVV FDESIHDPEH LHLQESPRRD GNVAETSGRD 180 ECNALLIKFG SEPYIGLEFR SEGEAYEYYR AYAKENGFSI RKSHVERSRV DHSLISRKFV 240 CVKQGFRSLK DKRYEGKIVR HRRVTRVDCR AAMIIKRRSG KWVVHRFHKE HNHGLGEPAN 300 SSELQSDQKM TNATKSILEA LYKTQCIDIE DNISHGQKTV EDNVEVFDLN ARELQRTTYV 360 KESPNEDVKM ADSSGREGNY AKGSLTTEES NERGDNDASL MKLGSEPYLG LQFGSQDEAY 420 EFYNAYAKEK GFSIRKSRIE RSRIDHSMIS RLYVCANQGL RSTKDKRYEG KIVRPRQETR 480 LDCRAAMFIK RRSGIWVVER FHKEHNHDLV DPTKAEKLRS HRKMTMATKS MLEELYKCGV 540 GPSKIVDLLT GVADGAKDIL ENNGAHNILG HNEEDSETYM KKERKNNIRI ECYSLLDYFQ 600 ELQAADPGFF YAVEFGENRC MRSIFWADSN AREAYKQFGD VLVFDTTCRT NKFLFPFACL 660 TGVNHHRQSV LFGCGFLADE TVESFVWLFE TWLRAMSNRQ PTSIITNQDK ATKAAIEKVF 720 PDSGHRFCMW HIEKDELENL THVFDMHTDF RAEYKSCIYN SYTPTEFELG WEALLLKYNL 780 KDNKWLSKLF NQRHYWVPLY LRHTFFGGMA TMHKEEGINS YFDGLLHGGA SFNEFVPQYE 840 QVIKQHRKQE VDGDFLTVFT RAVLTSKNPI EEQAAKIYTR NMFTKFQHEF IESSGCTAQK 900 IGDEGSISKY MVGKYRHKDE KMHIVAFDPT ENSASCSCQM FDSEGMLCRH VLKVFQVVNV 960 FEIPPRYILK RWTMNGRYGE FSTDEAGDGY EDPNRVNIWT LKEKTKAFVE LGEISRGSIN 1020 VAKGILQEAM RKLSIISVPT VSVQPDNLRC NSNQGVNIDE QGESVWAMDL NITVPDVHRI 1080 KSKGRPVSSR IKLGIEQAQK KKKRTCGTCK ETGHYTRTCP KGTVDQSPAS ELRQGPIDQS 1140 QTSAMFQGTV DLPHTSRQLQ RPVDHLESSA ILHSSFDQSQ TSMMLQEHYG QPQIFDML*

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence Send to blast

MNSFGFCLQS SEQTNQLIEI HSEMHNSTDQ RSPSYHAFYT PSSPPWSSFP IVSPITHSVP  60
TSASFTSAEV SSSLNAAAGE SSSVPSSDLF HLLPESETVG SVATCLPMQS TVATSPCDHP  120
QPWDMEESQQ CICLEDTIGL GREMLEPDVV FDESIHDPEH LHLQESPRRD GNVAETSGRD  180
ECNALLIKFG SEPYIGLEFR SEGEAYEYYR AYAKENGFSI RKSHVERSRV DHSLISRKFV  240
CVKQGFRSLK DKRYEGKIVR HRRVTRVDCR AAMIIKRRSG KWVVHRFHKE HNHGLGEPAN  300
SSELQSDQKM TNATKSILEA LYKTQCIDIE DNISHGQKTV EDNVEVFDLN ARELQRTTYV  360
KESPNEDVKM ADSSGREGNY AKGSLTTEES NERGDNDASL MKLGSEPYLG LQFGSQDEAY  420
EFYNAYAKEK GFSIRKSRIE RSRIDHSMIS RLYVCANQGL RSTKDKRYEG KIVRPRQETR  480
LDCRAAMFIK RRSGIWVVER FHKEHNHDLV DPTKAEKLRS HRKMTMATKS MLEELYKCGV  540
GPSKIVDLLT GVADGAKDIL ENNGAHNILG HNEEDSETYM KKERKNNIRI ECYSLLDYFQ  600
ELQAADPGFF YAVEFGENRC MRSIFWADSN AREAYKQFGD VLVFDTTCRT NKFLFPFACL  660
TGVNHHRQSV LFGCGFLADE TVESFVWLFE TWLRAMSNRQ PTSIITNQDK ATKAAIEKVF  720
PDSGHRFCMW HIEKDELENL THVFDMHTDF RAEYKSCIYN SYTPTEFELG WEALLLKYNL  780
KDNKWLSKLF NQRHYWVPLY LRHTFFGGMA TMHKEEGINS YFDGLLHGGA SFNEFVPQYE  840
QVIKQHRKQE VDGDFLTVFT RAVLTSKNPI EEQAAKIYTR NMFTKFQHEF IESSGCTAQK  900
IGDEGSISKY MVGKYRHKDE KMHIVAFDPT ENSASCSCQM FDSEGMLCRH VLKVFQVVNV  960
FEIPPRYILK RWTMNGRYGE FSTDEAGDGY EDPNRVNIWT LKEKTKAFVE LGEISRGSIN  1020
VAKGILQEAM RKLSIISVPT VSVQPDNLRC NSNQGVNIDE QGESVWAMDL NITVPDVHRI  1080
KSKGRPVSSR IKLGIEQAQK KKKRTCGTCK ETGHYTRTCP KGTVDQSPAS ELRQGPIDQS  1140
QTSAMFQGTV DLPHTSRQLQ RPVDHLESSA ILHSSFDQSQ TSMMLQEHYG QPQIFDML*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026455406.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G5DV98	0.0	A0A2G5DV98_AQUCA; Uncharacterized protein
STRING	Aquca_014_00229.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-166	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe6G023600.1.p