PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G023700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 967aa MW: 108259 Da PI: 8.3879

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G023700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	270	359	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke GFs+rks+ ++s+ ++++++r++vC ++g+r+ ++++ + k r+r etr++C+a l +k++ +gkw+v+++++eHnH l+ Aqcoe6G023700.1.p 270 EFYNAYAKEKGFSIRKSHIQRSRVDRSVISREYVCANQGFRSANDRRyKGKIVRPRRETRVDCRAVLSIKRR-SGKWVVDRFHKEHNHGLV 359 6***************************************999886788899**************.*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-24	270	359	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-25	480	573	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.249	761	797	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	767	797	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-6	772	799	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:4.10.60.10	1.7E-4	928	950	IPR001878	Zinc finger, CCHC-type
SuperFamily	SSF57756	2.62E-5	929	950	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.581	933	950	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MKNKKKSRSS MPANSSGAPP QPPPPPPPYH FIPPPPIPFY HPPPPPWSGY PGVWQIPPPG 60 PPPPGFAMTL PPPLPVSSSQ NATSGAAPAS SSGAPIAYPP PFGLWPHPGV FTSPPMVMCP 120 IMPPMPPTSS VQGSVMVPTT TQNSGMPSVS GQTPTVIEPS ENHGQPPPPL RKGPITRRSI 180 ARECAVDSAP EAPKRESGSA RQTKSKKHND VKQKNSPDQH RPEPDVFHDQ KSLRQDASTV 240 EGEENNAPLP KLGSEPVIGL GFASEDEAYE FYNAYAKEKG FSIRKSHIQR SRVDRSVISR 300 EYVCANQGFR SANDRRYKGK IVRPRRETRV DCRAVLSIKR RSGKWVVDRF HKEHNHGLVD 360 PVKAEKLRSH RKITSTTKSV IDTLYKCRIG PSKIIDVLAK AAAQEDKIEI SGLDLIKYMK 420 KEQKNNIEVD CYRVLEYFQG IQALDPGFFY AIEVGENRSM RSIFWADSRA RAAYNQFGDV 480 MVFDTICRTN KDLFPFASFT GVNHHRQAVL FGCAFLADET VESFIWLFET FLRAMSHKHP 540 VSLITNRDKA MMVAIEKVLP KTRQRSCMLH IEKSLLDSMS SIFDMHPDFQ AGYRKCINGS 600 RNPEEFELDW KKLLVKYSLK DNNWLIGMYD LRKHWVPLYL QDTFFAGMTT TQLGDGMDYF 660 DGFLHDKTTL DEFIPQYELA VKQRRDEEAD EDFMTMYTSA GSTSKNPLEE QAARVFTRNM 720 FTMFSHEFYE SSGCILRKID EEKTMSKYLV GKIGDEDDEM SVVIFDLLDN NASCSCHMFE 780 LEGMLCRHML KVFQEINVVE IPTKYILKRW TMNARYVGSC NNGAGDSLQS SPLANVWTLK 840 SAAIKFVELG AASTERLNCA FTIIEEGMEK LSLTCAPQSD SPPENVGCDS SQGEKADDTT 900 LHVYDTTSPV ETRDRPTPSK IRLGIKLTQK KKRKCSTCKQ TGHYTNTCPQ GSVIQSETST 960 NVAGSS*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MKNKKKSRSS MPANSSGAPP QPPPPPPPYH FIPPPPIPFY HPPPPPWSGY PGVWQIPPPG  60
PPPPGFAMTL PPPLPVSSSQ NATSGAAPAS SSGAPIAYPP PFGLWPHPGV FTSPPMVMCP  120
IMPPMPPTSS VQGSVMVPTT TQNSGMPSVS GQTPTVIEPS ENHGQPPPPL RKGPITRRSI  180
ARECAVDSAP EAPKRESGSA RQTKSKKHND VKQKNSPDQH RPEPDVFHDQ KSLRQDASTV  240
EGEENNAPLP KLGSEPVIGL GFASEDEAYE FYNAYAKEKG FSIRKSHIQR SRVDRSVISR  300
EYVCANQGFR SANDRRYKGK IVRPRRETRV DCRAVLSIKR RSGKWVVDRF HKEHNHGLVD  360
PVKAEKLRSH RKITSTTKSV IDTLYKCRIG PSKIIDVLAK AAAQEDKIEI SGLDLIKYMK  420
KEQKNNIEVD CYRVLEYFQG IQALDPGFFY AIEVGENRSM RSIFWADSRA RAAYNQFGDV  480
MVFDTICRTN KDLFPFASFT GVNHHRQAVL FGCAFLADET VESFIWLFET FLRAMSHKHP  540
VSLITNRDKA MMVAIEKVLP KTRQRSCMLH IEKSLLDSMS SIFDMHPDFQ AGYRKCINGS  600
RNPEEFELDW KKLLVKYSLK DNNWLIGMYD LRKHWVPLYL QDTFFAGMTT TQLGDGMDYF  660
DGFLHDKTTL DEFIPQYELA VKQRRDEEAD EDFMTMYTSA GSTSKNPLEE QAARVFTRNM  720
FTMFSHEFYE SSGCILRKID EEKTMSKYLV GKIGDEDDEM SVVIFDLLDN NASCSCHMFE  780
LEGMLCRHML KVFQEINVVE IPTKYILKRW TMNARYVGSC NNGAGDSLQS SPLANVWTLK  840
SAAIKFVELG AASTERLNCA FTIIEEGMEK LSLTCAPQSD SPPENVGCDS SQGEKADDTT  900
LHVYDTTSPV ETRDRPTPSK IRLGIKLTQK KKRKCSTCKQ TGHYTNTCPQ GSVIQSETST  960
NVAGSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026445762.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_026445763.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_026445764.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_026445765.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_026445766.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2G5DVF3	0.0	A0A2G5DVF3_AQUCA; Uncharacterized protein
STRING	Aquca_014_00230.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-157	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe6G023700.1.p