PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G028500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 299aa    MW: 33973.7 Da    PI: 10.0767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G028500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-15481281298
                        HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++ +++p+ f++++  g+k e+k+ +l++ +s +sW v    +++     +t+GW++F ++n+L +gDf++F+++g  +f++ v vf+
  Aqcoe6G028500.1.p  48 SLQGISIPRAFVKDYlVGEKCEGKKARLRTkKSKKSWIVST--KGCC----FTDGWENFHNENDLHAGDFLLFEHKG--GFTFDVLVFD 128
                        56679***********55667889******56669******..5555....9**********************765..8888999997 PP
2B357.62.3e-18191282689
                        ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ++++++k + + ++ +f +e          +++++s ++t++d++g+sW+++l+y+ + +   +++GW eF kan+Lk+gD+++F++++ ++
  Aqcoe6G028500.1.p 191 MKPSHFKWRTFHVSAPFGRESglvriaklAKDTNKSYMITIKDPNGKSWKLRLNYKPSANVACFGSGWPEFRKANKLKVGDVCTFMVVSMTS 282
                        566667777788888888888888888887778899***********************9**************************876544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-1933132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-1933132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.23737130IPR003340B3 DNA binding domain
CDDcd100171.04E-1238128No hitNo description
SMARTSM010195.1E-940130IPR003340B3 DNA binding domain
PfamPF023621.9E-1248128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-16186281IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-9187295IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-16189281IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-16189282IPR003340B3 DNA binding domain
CDDcd100178.51E-14222275No hitNo description
PROSITE profilePS5086311.646229291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPTWACLGIP SETVHIQIPN CSRFYLMAKK ITIQPNNPHF FKFIKCDSLQ GISIPRAFVK  60
DYLVGEKCEG KKARLRTKKS KKSWIVSTKG CCFTDGWENF HNENDLHAGD FLLFEHKGGF  120
TFDVLVFDDS MCEKAYPPLD GDAKDDEIVM EIDKPTKKRK YQNKKLAQIF SSSNLKNTAK  180
VKNPLQLIVE MKPSHFKWRT FHVSAPFGRE SGLVRIAKLA KDTNKSYMIT IKDPNGKSWK  240
LRLNYKPSAN VACFGSGWPE FRKANKLKVG DVCTFMVVSM TSQKILLEMS VCKCKASF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVI80.0A0A2G5DVI8_AQUCA; Uncharacterized protein
STRINGAquca_014_00275.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-21B3 family protein