PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G028700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 172aa    MW: 19562.6 Da    PI: 9.9069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G028700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-107683098
                       ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       k e+k  tl++ +sg+sW v        ++y +t+GW++F k+++L+ g  +vFk++g  +f   + vf+
  Aqcoe6G028700.1.p  7 KYEEKIATLRTrKSGKSWIVST------EGYCFTDGWEDFHKEHDLNPGYLLVFKHEGGLKF--EIIVFD 68
                       445567788887899*****99......6778***********************8775444..666665 PP
2B362.28.6e-20831621592
                        -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +p  f +e+  ++k+ ++ ++t + ++g+sWev l+++++ gr +l+ GW++Fv +n+Lk+gD+++Fkl+++ ++e 
  Aqcoe6G028700.1.p  83 AQQIPSGFGRENglDKKSIKPCMITQKGPKGKSWEVGLRHKGRYGRPYLGLGWSKFVGENKLKTGDVCTFKLVSKGSKEI 162
                        4569********6533333677899999999****************************************998755544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1170IPR003340B3 DNA binding domain
CDDcd100175.12E-8168No hitNo description
PROSITE profilePS5086311.519170IPR003340B3 DNA binding domain
PfamPF023622.8E-7766IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-12877IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-121680IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1372168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1781159IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-1783163IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1685159IPR015300DNA-binding pseudobarrel domain
CDDcd100175.58E-1886160No hitNo description
PROSITE profilePS5086312.19686170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRKGEKYEE KIATLRTRKS GKSWIVSTEG YCFTDGWEDF HKEHDLNPGY LLVFKHEGGL  60
KFEIIVFDTT MCEKVYPKEK DDAQQIPSGF GRENGLDKKS IKPCMITQKG PKGKSWEVGL  120
RHKGRYGRPY LGLGWSKFVG ENKLKTGDVC TFKLVSKGSK EIVMEFAVSR L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVJ87e-47A0A2G5DVJ8_AQUCA; Uncharacterized protein
STRINGAquca_014_00276.11e-47(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-23B3 family protein