PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G028800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 278aa    MW: 31675.3 Da    PI: 8.7752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G028800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-17241021499
                        T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++ +pk+f++++ + +++ ++ tl++ +s +sW+v+l      ++  +++GW +F  a++L++gDf+vFk++g+   +++v+vf+ 
  Aqcoe6G028800.1.p  24 ENIAIPKSFLRNYLIGEKCARKATLRTrKSRKSWKVNL------KGLCFEDGWDDFSTAHDLQDGDFLVFKHEGD--LTFYVTVFDP 102
                        4589*********555568889999995566*******......4567***********************8775..5559*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-216105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-208105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36511103IPR003340B3 DNA binding domain
CDDcd100171.00E-1611101No hitNo description
SMARTSM010196.1E-1713103IPR003340B3 DNA binding domain
PfamPF023621.4E-1324101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAKITIRASN PHFVVPIMPR EPQENIAIPK SFLRNYLIGE KCARKATLRT RKSRKSWKVN  60
LKGLCFEDGW DDFSTAHDLQ DGDFLVFKHE GDLTFYVTVF DPSECEKEYP SVNVTNDDQK  120
MEKGATTKKK MKKVSKKSSR SEGTERQHAD PPHFTVTLKP YFFNASILCR LTIILDVNMR  180
LVWLGGFGYN LRKPNPTLMS FEFSLFFMTR SIEFEFDIDF GFSLFVSISI CKTNTTSLSF  240
SLLEIELNGD ANSKYEDANS FKLAKACNQT NLSLSLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVH15e-98A0A2G5DVH1_AQUCA; Uncharacterized protein
STRINGAquca_014_00277.19e-99(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-25B3 family protein