PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G029300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 467aa    MW: 53624.1 Da    PI: 9.4926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.1e-1551141196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE....E-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk....ldgrs 88 
                        ffkvl   d + +  l +p+kf++++g k   + t++le ++g+  ++ l  ++  +++++++GW++F++ n L+  D +vF+    l+++ 
  Aqcoe6G029300.1.p  51 FFKVL--MDGFHE-KLAIPRKFTSKFGWK--LPETVVLEGPDGKATNIGL--TRIEDEVYFGNGWSQFASNNSLEKHDLMVFRfnesLERDC 135
                        78888..555555.5***********877..7779***************..*******************************443333334 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        +f  +v++
  Aqcoe6G029300.1.p 136 CF--KVMF 141
                        44..5555 PP
2B345.61.2e-14347432186
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+kv+++ +v  +  +++p kf++++ ++ +e   + l   +g  + W+v++i ++ ++    +++GW +Fv +n+L+ gD ++F+ld+
  Aqcoe6G029300.1.p 347 FIKVMKRTHVYMRFFMTIPPKFIRKNFSEVPE---MALLRVTGkaKAWKVTIITKGLDNLqPGISGGWADFVMENNLEKGDACLFELDN 432
                        89************************544344...4444444444*******7644443367899*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-2046147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2146147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.92848145IPR003340B3 DNA binding domain
CDDcd100175.82E-1549143No hitNo description
SMARTSM010191.1E-851145IPR003340B3 DNA binding domain
PfamPF023624.5E-1251141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-19341449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-17341435IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-17345449No hitNo description
SMARTSM010198.0E-10347451IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548347451IPR003340B3 DNA binding domain
PfamPF023621.1E-12347432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MICLRVLYVR VDNVVTTSKE EEEMARDCEC CKQWRKQLFW IDNEPPTVHF FFKVLMDGFH  60
EKLAIPRKFT SKFGWKLPET VVLEGPDGKA TNIGLTRIED EVYFGNGWSQ FASNNSLEKH  120
DLMVFRFNES LERDCCFKVM FFDKTACEKE GVACVRESDK PGLDTNGIQS VQINKDCTNN  180
VLSSERSPCS SESSGKHSSE RSWDSIDSCY YVTSGEESSE DSSDSSSVNR QTRENTFRVR  240
HGYPSTLRVK KNPRQNLPVK KNRKSANNDN LQKSNKVHVS RNKDRVPRAD TKSKGKSRLN  300
PTLSGTSKKL SYYRYFQSQR RPVTFEEEYL TLKKAQALER NSTKPHFIKV MKRTHVYMRF  360
FMTIPPKFIR KNFSEVPEMA LLRVTGKAKA WKVTIITKGL DNLQPGISGG WADFVMENNL  420
EKGDACLFEL DNINPNYESV VTVDVTIFRV VDKIVPLNRM LVKPPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVK90.0A0A2G5DVK9_AQUCA; Uncharacterized protein
STRINGAquca_014_00282.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein