PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G029300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 456aa    MW: 52280.5 Da    PI: 9.5028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G029300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.9e-1540130196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE....E-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk....ldgrs 88 
                        ffkvl   d + +  l +p+kf++++g k   + t++le ++g+  ++ l  ++  +++++++GW++F++ n L+  D +vF+    l+++ 
  Aqcoe6G029300.3.p  40 FFKVL--MDGFHE-KLAIPRKFTSKFGWK--LPETVVLEGPDGKATNIGL--TRIEDEVYFGNGWSQFASNNSLEKHDLMVFRfnesLERDC 124
                        78888..555555.5***********877..7779***************..*******************************443333334 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        +f  +v++
  Aqcoe6G029300.3.p 125 CF--KVMF 130
                        44..5555 PP
2B345.71.2e-14336421186
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+kv+++ +v  +  +++p kf++++ ++ +e   + l   +g  + W+v++i ++ ++    +++GW +Fv +n+L+ gD ++F+ld+
  Aqcoe6G029300.3.p 336 FIKVMKRTHVYMRFFMTIPPKFIRKNFSEVPE---MALLRVTGkaKAWKVTIITKGLDNLqPGISGGWADFVMENNLEKGDACLFELDN 421
                        89************************544344...4444444444*******7644443367899*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-2135136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-2035136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.92837134IPR003340B3 DNA binding domain
CDDcd100174.78E-1538132No hitNo description
SMARTSM010191.1E-840134IPR003340B3 DNA binding domain
PfamPF023624.3E-1240130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-19330438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-17330424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-17334438No hitNo description
SMARTSM010198.0E-10336440IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548336440IPR003340B3 DNA binding domain
PfamPF023621.0E-12336421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVTVTTSKEE EEMARDCECC KQWRKQLFWI DNEPPTVHFF FKVLMDGFHE KLAIPRKFTS  60
KFGWKLPETV VLEGPDGKAT NIGLTRIEDE VYFGNGWSQF ASNNSLEKHD LMVFRFNESL  120
ERDCCFKVMF FDKTACEKEG VACVRESDKP GLDTNGIQSV QINKDCTNNV LSSERSPCSS  180
ESSGKHSSER SWDSIDSCYY VTSGEESSED SSDSSSVNRQ TRENTFRVRH GYPSTLRVKK  240
NPRQNLPVKK NRKSANNDNL QKSNKVHVSR NKDRVPRADT KSKGKSRLNP TLSGTSKKLS  300
YYRYFQSQRR PVTFEEEYLT LKKAQALERN STKPHFIKVM KRTHVYMRFF MTIPPKFIRK  360
NFSEVPEMAL LRVTGKAKAW KVTIITKGLD NLQPGISGGW ADFVMENNLE KGDACLFELD  420
NINPNYESVV TVDVTIFRVV DKIVPLNRML VKPPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVK90.0A0A2G5DVK9_AQUCA; Uncharacterized protein
STRINGAquca_014_00282.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein