PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G031900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24362 Da    PI: 10.0713
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G031900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.6e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvt+skRrngilKKA E+ +LC+ae+a++ifsstgk+ ey+s
  Aqcoe6G031900.1.p  9 KRIENSTNRQVTYSKRRNGILKKAREIHILCGAEIALVIFSSTGKMSEYIS 59
                       79***********************************************86 PP
2K-box80.25.1e-2773167195
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        yqk+sgk+l++ak+e+l+ el+++kke++n+q e+Rhl+Ged++sL+ keL  +e++L+++l+k+R+kK+++++++ +++   e+e+++   
  Aqcoe6G031900.1.p  73 YQKTSGKKLWDAKHEYLSSELDRIKKENDNMQIELRHLKGEDINSLNAKELIPIEEALQNGLSKVRDKKSDIWRMMRKNTGLLEEENKRLSY 164
                        899************************************************************************99999999999988877 PP

              K-box  93 aLr 95 
                         L+
  Aqcoe6G031900.1.p 165 HLH 167
                        776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-35298IPR002100Transcription factor, MADS-box
CDDcd002657.04E-39282No hitNo description
PRINTSPR004041.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1884165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.09186172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGILK KAREIHILCG AEIALVIFSS TGKMSEYISP  60
PGPTTLIKIL DKYQKTSGKK LWDAKHEYLS SELDRIKKEN DNMQIELRHL KGEDINSLNA  120
KELIPIEEAL QNGLSKVRDK KSDIWRMMRK NTGLLEEENK RLSYHLHSLE IGGNDREMEN  180
GYHQKGRDYP AQMPFTFRVQ PIQPNLQESK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17168168MEF2C
5f28_B2e-17168168MEF2C
5f28_C2e-17168168MEF2C
5f28_D2e-17168168MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4894750.0EF489475.1 Aquilegia vulgaris MADS transcription factor PI (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020679600.11e-108MADS-box transcription factor 2 isoform X1
RefseqXP_020679601.11e-108MADS-box transcription factor 2 isoform X2
SwissprotQ0HA255e-99MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2G5DVM51e-153A0A2G5DVM5_AQUCA; Uncharacterized protein
TrEMBLA4UU401e-153A4UU40_AQUVU; MADS transcription factor PI
STRINGXP_010269077.11e-106(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]