PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G031900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 158aa    MW: 18101.9 Da    PI: 10.2762
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G031900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvt+skRrngilKKA E+ +LC+ae+a++ifsstgk+ ey+s
  Aqcoe6G031900.2.p  9 KRIENSTNRQVTYSKRRNGILKKAREIHILCGAEIALVIFSSTGKMSEYIS 59
                       79***********************************************86 PP
2K-box77.53.4e-2673142170
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                        yqk+sgk+l++ak+e+l+ el+++kke++n+q e+Rhl+Ged++sL+ keL  +e++L+++l+k+R+kK 
  Aqcoe6G031900.2.p  73 YQKTSGKKLWDAKHEYLSSELDRIKKENDNMQIELRHLKGEDINSLNAKELIPIEEALQNGLSKVRDKKV 142
                        899*****************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-35298IPR002100Transcription factor, MADS-box
CDDcd002652.63E-38282No hitNo description
PRINTSPR004049.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-1684142IPR002487Transcription factor, K-box
PROSITE profilePS5129711.3886157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGILK KAREIHILCG AEIALVIFSS TGKMSEYISP  60
PGPTTLIKIL DKYQKTSGKK LWDAKHEYLS SELDRIKKEN DNMQIELRHL KGEDINSLNA  120
KELIPIEEAL QNGLSKVRDK KVSFHPSLFL YFSRSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18173169MEF2C
5f28_B6e-18173169MEF2C
5f28_C6e-18173169MEF2C
5f28_D6e-18173169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4894750.0EF489475.1 Aquilegia vulgaris MADS transcription factor PI (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269077.18e-78PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA258e-71MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2G5DVW71e-111A0A2G5DVW7_AQUCA; Uncharacterized protein
STRINGAquca_014_00308.17e-97(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]