PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G031900.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17637.5 Da    PI: 10.449
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G031900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvt+skRrngilKKA E+ +LC+ae+a++ifsstgk+ ey+s
  Aqcoe6G031900.3.p  9 KRIENSTNRQVTYSKRRNGILKKAREIHILCGAEIALVIFSSTGKMSEYIS 59
                       79***********************************************86 PP
2K-box80.15.3e-2773150178
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                        yqk+sgk+l++ak+e+l+ el+++kke++n+q e+Rhl+Ged++sL+ keL  +e++L+++l+k+R+kK+++++++ +
  Aqcoe6G031900.3.p  73 YQKTSGKKLWDAKHEYLSSELDRIKKENDNMQIELRHLKGEDINSLNAKELIPIEEALQNGLSKVRDKKSDIWRMMRK 150
                        899*******************************************************************99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-35298IPR002100Transcription factor, MADS-box
CDDcd002654.35E-38282No hitNo description
PRINTSPR004048.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1684145IPR002487Transcription factor, K-box
PROSITE profilePS5129712.50886153IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGILK KAREIHILCG AEIALVIFSS TGKMSEYISP  60
PGPTTLIKIL DKYQKTSGKK LWDAKHEYLS SELDRIKKEN DNMQIELRHL KGEDINSLNA  120
KELIPIEEAL QNGLSKVRDK KSDIWRMMRK NVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18173169MEF2C
5f28_B4e-18173169MEF2C
5f28_C4e-18173169MEF2C
5f28_D4e-18173169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4894750.0EF489475.1 Aquilegia vulgaris MADS transcription factor PI (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087791.12e-81MADS-box transcription factor 4 isoform X2
SwissprotQ074741e-73MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A2G5DWC31e-107A0A2G5DWC3_AQUCA; Uncharacterized protein
STRINGAquca_014_00308.11e-105(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]