PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G036300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 221aa    MW: 24134.1 Da    PI: 7.2956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G036300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-1510102199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                        ff+vl+p  ++k++ l+l+ +f++e+g+k   +kt++l+ ++g+  +  l  +++++ ++++ GW++F+ ++ L+++D +vF+++++ s+f 
  Aqcoe6G036300.1.p  10 FFSVLMPGTNFKEK-LTLSTNFVKEFGSK--LPKTVVLKVPTGEATDEGL--TRTKDDIFFEHGWSQFATEQSLEVNDLLVFTFSESdSCF- 95 
                        8999*******998.***********988..899****************..*******************************99766888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                          v +f++
  Aqcoe6G036300.1.p  96 -DVLLFDT 102
                        .8887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-174105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-176105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-148101No hitNo description
PROSITE profilePS5086310.8569103IPR003340B3 DNA binding domain
SMARTSM010192.6E-510103IPR003340B3 DNA binding domain
PfamPF023629.5E-1210100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDKSSNSRTF FSVLMPGTNF KEKLTLSTNF VKEFGSKLPK TVVLKVPTGE ATDEGLTRTK  60
DDIFFEHGWS QFATEQSLEV NDLLVFTFSE SDSCFDVLLF DTTACGKKGM VSVEDSITND  120
SLSLQINKDC DDDVLSIESS GNSIASLGNS SDGPWHNSDN SRDSSSMKGR KKGAKKNRNF  180
CGKAQSSRLP PSRKKKRVLQ AETMSKEIAA GLNITLLAYV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DW993e-58A0A2G5DW99_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_014_00300.15e-59(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-17B3 family protein