PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G036600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 355aa    MW: 39633.8 Da    PI: 8.2178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1516108199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                        ff+vl+p  ++k++ l+l+ +f++e+g+k   +kt++l+ ++g+  +  l  +++++ ++++ GW++F+ ++ L+++D +vF+++++ s+f 
  Aqcoe6G036600.1.p  16 FFSVLMPGTNFKEK-LTLSTNFVKEFGSK--LPKTVVLKVPTGEATDEGL--TRTKDDIFFEHGWSQFATEQSLEVNDLLVFTFSESdSCF- 101
                        8999*******998.***********988..899****************..*******************************99766888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                          v +f++
  Aqcoe6G036600.1.p 102 -DVLLFDT 108
                        .8877775 PP
2B345.31.6e-14238328194
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                        f+++ ++s+v+k   l+lp kf++++ +++ +e     + +  ++ We  + + +    + + + +GW +Fv++n+L+egD+++F+l+ + +
  Aqcoe6G036600.1.p 238 FITAVKRSHVHKPFYLTLPIKFMRQNfNEV-PE---TAMLTVGSKAWEGSIHIrSEAH-AqHGICSGWVDFVRDNDLEEGDTCLFELNINsN 324
                        7888999*******************5444.33...56677799****9995523333.359999*********************985424 PP

                        EE..EE CS
                 B3  89 efelvv 94 
                        ++  +v
  Aqcoe6G036600.1.p 325 SK--TV 328
                        44..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1610111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1712111IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-1314107No hitNo description
PROSITE profilePS5086310.85615109IPR003340B3 DNA binding domain
PfamPF023622.5E-1116106IPR003340B3 DNA binding domain
SMARTSM010192.6E-516109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-18230333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18231323IPR015300DNA-binding pseudobarrel domain
CDDcd100177.50E-14236335No hitNo description
PfamPF023621.4E-12238328IPR003340B3 DNA binding domain
SMARTSM010191.2E-5238334IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928238334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNDLSRMDKS SNSRTFFSVL MPGTNFKEKL TLSTNFVKEF GSKLPKTVVL KVPTGEATDE  60
GLTRTKDDIF FEHGWSQFAT EQSLEVNDLL VFTFSESDSC FDVLLFDTTA CGKKGMVSVE  120
DSITNDSLSL QINKDCDDDV LSIESSGNSI ASLGNSSDGP WHNSDKSRDS SSMKGRKKGA  180
KKNRNFCGKA QSSRLPPSRS SRKLSDHSYF RTQKVTSKDF TATVSLKPRE ITSTRPYFIT  240
AVKRSHVHKP FYLTLPIKFM RQNFNEVPET AMLTVGSKAW EGSIHIRSEA HAQHGICSGW  300
VDFVRDNDLE EGDTCLFELN INSNSKTVMA LDVTIWKKGT VIRLVLQFCC TLLF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DW992e-60A0A2G5DW99_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_014_00300.13e-61(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-17B3 family protein