PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G045000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 236aa    MW: 27152.5 Da    PI: 9.1258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G045000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32158216159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver +edp++v++tYeg+H h+
  Aqcoe6G045000.1.p 158 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDSCRVKKRVERLSEDPRMVITTYEGRHAHS 216
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33143216IPR003657WRKY domain
SuperFamilySSF1182902.22E-28150217IPR003657WRKY domain
PROSITE profilePS5081129.838153218IPR003657WRKY domain
SMARTSM007741.7E-36158217IPR003657WRKY domain
PfamPF031063.6E-25159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSSYQVMLNQ MLLEDQNMSC STMGFHAQVP STLPWALSQF GYHHHQSLRT TSMGSTDIIT  60
SDDHLTDTSD PKHKDVVIPY HLDHFEAPSM PKSSSTSNPW PWGEMDCHKG GSNKRYGSVG  120
DHINHLGVGA MKMKKVKTRR KIREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRS  180
YYRCTQDSCR VKKRVERLSE DPRMVITTYE GRHAHSPSHD LDNSQNPSQT NNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26149215874Probable WRKY transcription factor 4
2lex_A6e-26149215874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268590.12e-88PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A200QJC31e-88A0A200QJC3_9MAGN; DNA-binding WRKY
STRINGXP_010268590.18e-88(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-59WRKY DNA-binding protein 13