PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G046800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YC
Protein Properties Length: 150aa    MW: 17004.5 Da    PI: 10.1016
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G046800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.67.3e-1512102897
              NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                        ++ ++++++ + ++P+ r+kki+k d+d++++++ea  l+  + elf+  l+ +s   a e+kr+ +k   +  a +r + + dfl+d  p
  Aqcoe6G046800.1.p  12 NNNDNEENLLQPSFPVGRVKKIMKLDKDINKVTSEALFLINLSTELFLQFLSEKSSKIAIEKKRKIIKIDHLRIAAKRHQpTSDFLLDSLP 102
                        456788899999********************************************************999998887764389*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-1723105IPR009072Histone-fold
PfamPF008082.6E-172486IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-1825102IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAEEEQNNEN TNNNDNEENL LQPSFPVGRV KKIMKLDKDI NKVTSEALFL INLSTELFLQ  60
FLSEKSSKIA IEKKRKIIKI DHLRIAAKRH QPTSDFLLDS LPIPSESVNR PSKDGNQSAP  120
IEKPLSVGTR RIDDIFKKSH KVPLLKHHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438038.19e-53nuclear transcription factor Y subunit C-6
TrEMBLA0A2G5DWH22e-93A0A2G5DWH2_AQUCA; Uncharacterized protein
STRINGAquca_014_00448.13e-94(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-38nuclear factor Y, subunit C13