PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G048100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 325aa    MW: 34457.7 Da    PI: 5.0316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G048100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-0590112123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C++Cgk F ++  L  H++ H
  Aqcoe6G048100.1.p  90 YFCNYCGKKFYNSQALGGHQNAH 112
                        78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-787116No hitNo description
Gene3DG3DSA:3.30.160.601.9E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.88490117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEEGEEACN SPKSSSVSLS IESAGSKDNS EDSKGKNKEV LPVDNRSDDD LLELKLSSTN  60
PSVEPTNNKL SLFPLDVGLG SSRDSEPKAY FCNYCGKKFY NSQALGGHQN AHKYERGLAK  120
RRSEYDLLGY PPYYYSTVPP YPSHGSFNRS LGVHMNSGIH KPYYPWSHMG PRYGHGGWSR  180
PSFQPTPGMG NLRENSYQAN PGGLATPGLS GLDNTVVARM MGYTPSTGTR EGENNVLGNQ  240
MIGGSSTFMT SSAPPAAISD GGNNILGNQS MGSSSALMTS SAAPVGISDG GNNLPGDSSG  300
AMERSSADAN NTEGEEDLDL TLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DWQ00.0A0A2G5DWQ0_AQUCA; Uncharacterized protein
STRINGAquca_014_00459.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-18C2H2 family protein