PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G063100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 378aa    MW: 41857.9 Da    PI: 7.3628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G063100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-21179229256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Aqcoe6G063100.1.p 179 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 229
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-34178238No hitNo description
PROSITE profilePS5103223.341179236IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-23179237IPR016177DNA-binding domain
SMARTSM003809.3E-39179242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32179237IPR001471AP2/ERF domain
PRINTSPR003673.8E-11180191IPR001471AP2/ERF domain
PfamPF008471.3E-14180229IPR001471AP2/ERF domain
PRINTSPR003673.8E-11202218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MATVIDFYRS NSSGSTLADP FREELMMALQ PFIKSASPSN SSSTPTQIPS PSSSSTISFD  60
SSSPSPYSFS PSTSSFEPNL CFSDYSTTQM FSQGFSSHLE QTGSIGLNHL TPSQIHQIQA  120
QIQFQKLQQQ QQHMAAMAAA ASIHNQKLNQ LQQQKTLSFL SPKAIPMKQV GSPSKPTKLY  180
RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEEAALAYD KAAYKLRGEL ARLNFPHLRH  240
QGSHVGGEYG GYKPLHSSVD AKLEAICQSL KQGNSGKPTV KKTMGKQPPV VVEDSSSEED  300
IKVENSSSPS PSPSPSLTES SDVSSEYYSP MSEIFQDLAE APMYEKDNFM LQKYPSFEQF  360
MLQKYPSVEV DWEAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22178236160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678421.11e-109ethylene-responsive transcription factor RAP2-4-like isoform X1
RefseqXP_021678422.11e-109ethylene-responsive transcription factor RAP2-4-like isoform X2
RefseqXP_021678423.11e-109ethylene-responsive transcription factor RAP2-4-like isoform X3
SwissprotQ8H1E47e-81RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2G5DXY40.0A0A2G5DXY4_AQUCA; Uncharacterized protein
STRINGAquca_014_00591.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.19e-58related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]