PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G063200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 385aa    MW: 42489.4 Da    PI: 6.9418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G063200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20172221255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Aqcoe6G063200.1.p 172 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.92E-34171231No hitNo description
PROSITE profilePS5103223.248172229IPR001471AP2/ERF domain
SMARTSM003802.8E-38172235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32172230IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23172230IPR016177DNA-binding domain
PfamPF008472.7E-14173221IPR001471AP2/ERF domain
PRINTSPR003673.9E-11173184IPR001471AP2/ERF domain
PRINTSPR003673.9E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAALDFYSR SNSNGSTLTD PCSEELMMAL QPFITSASPT QNPSPSSSST ISFDSSSPSP  60
YPFSSFESNL CNPVYCSTST TPMFSQGLSS YDQVGLEQTG SIGLNNLTSS QIHQIQTQIQ  120
FQQQQHMAAM AAAASIHNQQ LNQLQQQTTL SFLSPKAIPM KQVGSSSKST KLYRGVRQRH  180
WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDLARLNFPH LRHQGSHVGS  240
EFGDYKPLHS SVDAKLEAIC ENMKQGNLGK PTVVLKKNAK KKTMSQKSSK TQTNVINKSV  300
ENLSNGEMSI LGSEDIKMES SLTTSQSEID VASSPESDIS RFQECTETPW NDSDNFALQK  360
YPSIDNYPLQ KYPSFDIDWD SILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22171229463ATERF1
3gcc_A5e-22171229463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261262.11e-112PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2G5DX490.0A0A2G5DX49_AQUCA; Uncharacterized protein
STRINGAquca_014_00592.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-57related to AP2 4