PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G064400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 408aa    MW: 45617.7 Da    PI: 8.2802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G064400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11232278455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L   ++Y+k+Lq
  Aqcoe6G064400.1.p 232 DHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDSIKYLKQLQ 278
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16228295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16232290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9232278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-12233282No hitNo description
SMARTSM003532.7E-13234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.553338407IPR002912ACT domain
CDDcd021160.00578339396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVDLSVYHMK HVLGNREEGQ EVWVFLHKAF FSGSSKAFQS KIKKSKLVLM DMSHWLSEMG  60
MEDSSFNHQY QMNSLSDFAP QQLAAAFGED FRHSFSSESF SSYPTFNPCS NATTITHSSL  120
EASQTCFERP AKQLKTSNSW ESCTTEQISV PEASSPNMLS FGNSSSPTSH QKFYGGAIKP  180
KDEVVSPTNK SCSSEPRISH GAYVNQSYAP KACQGNKRVN TPSTKPPSYT QDHIIAERKR  240
REKLSQRFIA LSAIVPGLKK MDKASVLGDS IKYLKQLQEK VKILEEQTSK KTMESVVSVR  300
KFQLLSDDDT SSTDENFIKC SDEPFPEIEA RVSDKNVLIR IHCEKRKGVL VKTLAVIEQL  360
NLSVLNSNST PFGTSTLDIT VIAEMDEEFN MTVKDLVKNL RSAILRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-13232287863Transcription factor MYC2
5gnj_B9e-13232287863Transcription factor MYC2
5gnj_E9e-13232287863Transcription factor MYC2
5gnj_F9e-13232287863Transcription factor MYC2
5gnj_G9e-13232287863Transcription factor MYC2
5gnj_I9e-13232287863Transcription factor MYC2
5gnj_M9e-13232287863Transcription factor MYC2
5gnj_N9e-13232287863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERKRRE
2237242RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271548.11e-127PREDICTED: transcription factor bHLH18-like
RefseqXP_019055013.11e-127PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2G5E7X00.0A0A2G5E7X0_AQUCA; Uncharacterized protein
STRINGAquca_010_00012.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-58bHLH family protein