PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G066900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 340aa MW: 38918.2 Da PI: 4.7508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G066900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	169	212	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++eY+k+L Aqcoe6G066900.1.p 169 LMAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIEYMKEL 212 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.262	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-15	166	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-9	169	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-12	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.51E-4	170	217	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-15	170	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00175	266	328	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MELNEHGFLE ELLSLRRENW ETFPPTGMSD QFFSNGWSLD CFNENQSGIL PNLSLESGFD 60 VSIEPSFNCS MNDVYYPYES NGLLVPEMNS SSYHQKRDTT HTQDDIPLLM EDEEHSLLNN 120 DFHSFEEKET SCKVESIQAT ESTPVFNMGL CNEKKNKIKK LDGQPSKNLM AERRRRKRLN 180 DRLSMLRSVV PRISKMDRTS ILGDTIEYMK ELLEKIKNLQ GDIEEESNHL NFKGVLKDLK 240 ENELVMRNTP KLPLLQFDVE KKNMNTRIEI CCTSKPGLLM STVNTLEALG LEIQQCVISC 300 FNDFAMQASC SEELEKRGMS CEEIKQALFK NAGYGGRCI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	178	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275502.1	1e-148	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-74	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2G5E7V2	0.0	A0A2G5E7V2_AQUCA; Uncharacterized protein
STRING	Aquca_010_00033.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-77	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Aqcoe6G066900.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]