PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G069700.6.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27110.9 Da    PI: 9.7102
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G069700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53e-271059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkly+++s
  Aqcoe6G069700.6.p 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGKLYDFAS 59
                       9***********************************************86 PP
2K-box85.79.3e-2981170998
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + +++ + +q+e+a L++++++Lq+++R+l+Ge+L+ Ls+k+Lq+Le+qLe sl+ +R +K++ll+++i+el +k + ++++n++L kk+
  Aqcoe6G069700.6.p  81 NPTSEVKFWQREAASLRQQLHELQENHRKLMGEELSGLSVKDLQNLENQLEMSLRGVRVQKDQLLTNEIQELNRKGNLIHQDNMELYKKV 170
                        567889*********************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-32290IPR002100Transcription factor, MADS-box
CDDcd002651.80E-45278No hitNo description
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.70986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSS TGKLYDFAST  60
SMKSVIERYN KSKEEHHQLL NPTSEVKFWQ REAASLRQQL HELQENHRKL MGEELSGLSV  120
KDLQNLENQL EMSLRGVRVQ KDQLLTNEIQ ELNRKGNLIH QDNMELYKKV NLIRQENMEL  180
YKKVYGTRDA NRATRNLPLP NGFSISEELH VPIHLQLCQP EQQNYETSPG ATKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22181181MEF2C
5f28_B5e-22181181MEF2C
5f28_C5e-22181181MEF2C
5f28_D5e-22181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802492e-96JX680249.1 Aquilegia coerulea MADS-box protein AGL17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254615.11e-146PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010254616.11e-146PREDICTED: MADS-box transcription factor 23 isoform X2
SwissprotQ6EP491e-114MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U7ZMU31e-145A0A1U7ZMU3_NELNU; MADS-box transcription factor 23 isoform X1
TrEMBLA0A1U7ZZD91e-145A0A1U7ZZD9_NELNU; MADS-box transcription factor 23 isoform X2
STRINGXP_010254615.11e-146(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-112AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]