PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G092100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 594aa    MW: 65883.4 Da    PI: 6.6085
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G092100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-15288347155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Aqcoe6G092100.1.p 288 SVYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 347
                        78*******************666664477446**********99*************98 PP
2AP253.17.7e-17390441155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  Aqcoe6G092100.1.p 390 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 441
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-12288347IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17288356IPR016177DNA-binding domain
CDDcd000181.21E-21288357No hitNo description
PROSITE profilePS5103219.256289355IPR001471AP2/ERF domain
SMARTSM003802.0E-27289361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-16289356IPR001471AP2/ERF domain
PRINTSPR003674.4E-6290301IPR001471AP2/ERF domain
CDDcd000186.36E-25390449No hitNo description
PfamPF008473.5E-11390441IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18390450IPR016177DNA-binding domain
SMARTSM003809.7E-31391455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17391449IPR001471AP2/ERF domain
PROSITE profilePS5103219.111391449IPR001471AP2/ERF domain
PRINTSPR003674.4E-6431451IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MANGNWISFS QSPLETLRPY HQQALIPFES SYSDSYQQYL FNNFYGNGDG LNSRQEQPTT  60
HYHQQIPNSS SENEEIKEPN IVDLSILTSH FQPTTVPKLE DFLGSSNNST TVHHHHSSSL  120
PRYSDSQTET QESSLSNVYE QGGSSSCHFA EHHHHHQQQQ DLKGIGSTTT GSTGFIQQQQ  180
QQQQQQTAAF STNSGSEVDN NDSSVSNRFS CGNFQSSSNN HNHNSNSFES RNNELMFCDG  240
PQALSLGVCN INNNNNQKNN SAENRIVSVE PAETTKRLAS DTFGQRTSVY RGVTRHRWTG  300
RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EDKAARAYDL AALKYWGPSA TTNFPATNYT  360
QEIEEMKNMT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG  420
TFGTEEEAAE AYDIAAIKFR GLNAVTNFEM NRYDVDAIAN SALPIGAAAK RLKLSLEAEA  480
AGTISTPEFQ QTQSSNSNTS IVAVPNVSCG VPYDASLALY HQNLLHHFHS TAAGSSDSTS  540
STAVTPMALL PQPDYGSRNF LYGFTTPINM DNQFANNHTN GNYLPWNMGS SSD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254562.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_019053013.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ52QU21e-143AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G5E9480.0A0A2G5E948_AQUCA; Uncharacterized protein
STRINGAquca_010_00266.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-122AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]