PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 229aa    MW: 26065.5 Da    PI: 10.4975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-1614103199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv+     ++++ l+lpk  +  ++  ++ +k+ tl +++g sW v +  ++ ++ ++l++GWk F+++  L+ g+fvvF+++g++ f  
  Aqcoe6G100200.1.p  14 FFKVM--VGDFQKK-LSLPKALTLCFK--PKVPKMFTLISPTGSSWMVSV--KRVDKDFFLANGWKTFAEDYALELGEFVVFRYKGDNAF-- 96 
                        56666..4445554.999999984444..346789***************..99999*****************************9999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         vkvf k
  Aqcoe6G100200.1.p  97 SVKVFGK 103
                        9999876 PP
2B348.51.6e-151452271598
                        -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         l++pk fa+++  ++    ++++tl+ ++g +W++++++  ++    l +GWk Fv  n+Lk++D++vF+l++r+  +++v+++r
  Aqcoe6G100200.1.p 145 TLIIPKLFAKKYlkNNHLGLTRDVTLRVTTGGTWNLRYSVGVHR--R-LIGGWKTFVVGNNLKARDILVFELVDRNPIQMNVSIIR 227
                        699*********87333347789***************554444..3.556**********************9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-228106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-219106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.64811104IPR003340B3 DNA binding domain
CDDcd100176.28E-1512101No hitNo description
PfamPF023622.3E-1214103IPR003340B3 DNA binding domain
SMARTSM010192.4E-1414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18124227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-17124227IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-15129227No hitNo description
PROSITE profilePS5086312.576131228IPR003340B3 DNA binding domain
SMARTSM010191.5E-7131226IPR003340B3 DNA binding domain
PfamPF023625.1E-13144227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSMLHHTSN IPNFFKVMVG DFQKKLSLPK ALTLCFKPKV PKMFTLISPT GSSWMVSVKR  60
VDKDFFLANG WKTFAEDYAL ELGEFVVFRY KGDNAFSVKV FGKNACEKEV PSTNKNIEEV  120
ANHVTSKYPM FTTTVPKGDL TWYTTLIIPK LFAKKYLKNN HLGLTRDVTL RVTTGGTWNL  180
RYSVGVHRRL IGGWKTFVVG NNLKARDILV FELVDRNPIQ MNVSIIRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E9G31e-157A0A2G5E9G3_AQUCA; Uncharacterized protein
STRINGAquca_010_00338.11e-158(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein