PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 522aa    MW: 61031.5 Da    PI: 8.5042
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-15271071399
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +rl +pk+f+ ++ g ke s   +l+  +g++W+vkl  r   g++++++GW eFv+   ++++ ++vF+++g+s+f   v +f++
  Aqcoe6G100400.1.p  27 DRRLAIPKEFI-SCLG-KELSNVAVLKVHRGKEWDVKL--REEEGQVWFQDGWHEFVEYYSICVRYMLVFRYNGNSRF--SVIIFDE 107
                        579********.6644.458889999************..**********************************9999..8888875 PP
2B348.81.2e-152313071598
                        -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++lp  f++++  +  +   +tl+ ++gr+W+v +    ++ r+ l kGWk Fv +n+L+e+D+++F+l++++e   +v++fr
  Aqcoe6G100400.1.p 231 CVTLPTVFTRTYLTNDVR--VVTLQVSDGRTWQVHC---AGRLRVRLYKGWKAFVLDNNLEENDICIFELVNKMEL--KVTIFR 307
                        578999999999444334..799999**********...5556899***********************9875555..999998 PP
3B344.23.6e-144375131798
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +pk+fa+++ ++  ++  +tl+ ++  sW  ++  + ++ r  l kGWkeFv an+L+e+D+++F+l++++  el v ++r
  Aqcoe6G100400.1.p 437 NIPKDFADNYLKDAFQG--ITLRLSNKGSWHARY--QAGDHRK-LCKGWKEFVIANHLQENDVCIFELVDSNHIELEVFIIR 513
                        69*****9996665566..777777799******..7766664.778********************998888777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-229108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2010107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57615108IPR003340B3 DNA binding domain
SMARTSM010195.3E-1016108IPR003340B3 DNA binding domain
PfamPF023621.2E-1227107IPR003340B3 DNA binding domain
CDDcd100171.23E-1429106No hitNo description
PROSITE profilePS5086313.451217309IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-18226307IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-17230307No hitNo description
Gene3DG3DSA:2.40.330.105.7E-19230308IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-8230309IPR003340B3 DNA binding domain
PfamPF023627.2E-14231307IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716421515IPR003340B3 DNA binding domain
SMARTSM010192.3E-6426515IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-17436512IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-12437513IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-16437515IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-13438513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MQRSKKKRME KKRSHFYTII WPCCIQDRRL AIPKEFISCL GKELSNVAVL KVHRGKEWDV  60
KLREEEGQVW FQDGWHEFVE YYSICVRYML VFRYNGNSRF SVIIFDESAS EMKYPCDVNT  120
LEEPNIASQI SAKQEIQKED FVKPLDYLPL KQIMDKCDNQ KTSKHGTTSS QHPRYFLQYN  180
AKNRAETISN SDWGICKQGN WIFMQLQPVS IQNKERIIRA ARTFTSENPF CVTLPTVFTR  240
TYLTNDVRVV TLQVSDGRTW QVHCAGRLRV RLYKGWKAFV LDNNLEENDI CIFELVNKME  300
LKVTIFRDHQ DPTQRKSIST RPKSRRCNLI CRGRGCNGKE RKSTHSKKNN IFEPVREEKA  360
YPMVDKNDDD ALLDCNRPYS SIEPITSTTA IKVPTTWVDE ECWNLSNSLD AEQGFDPCVH  420
YRERPAELVS GREISYNIPK DFADNYLKDA FQGITLRLSN KGSWHARYQA GDHRKLCKGW  480
KEFVIANHLQ ENDVCIFELV DSNHIELEVF IIRVHSPQYV A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014KKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-40B3 family protein