PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100500.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 194aa    MW: 22619.1 Da    PI: 8.8694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-151098198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ffk l   + ++++ l+lp +++++++g+   +k+ +l++++ rsWev +  +k ++  +l + W +F+k+n L+ gD +vF ++g+sef   v
  Aqcoe6G100500.2.p 10 FFKLL--IHDFSQQ-LCLPTDYINNFNGDV--PKQFILTSSTRRSWEVSV--KKVDNDLFLCEKWPNFAKDNALEFGDLLVFIYNGNSEF--DV 94
                       67777..6666665.********8886664..4469**************..**********************************9999..99 PP

                       EEE- CS
                 B3 95 kvfr 98
                       k+f 
  Aqcoe6G100500.2.p 95 KIFG 98
                       9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-196102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-226102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7887100IPR003340B3 DNA binding domain
CDDcd100172.19E-13897No hitNo description
SMARTSM010194.2E-1210100IPR003340B3 DNA binding domain
PfamPF023621.2E-121097IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MNRISSAPSF FKLLIHDFSQ QLCLPTDYIN NFNGDVPKQF ILTSSTRRSW EVSVKKVDND  60
LFLCEKWPNF AKDNALEFGD LLVFIYNGNS EFDVKIFGSN ACEKEVELAL KNNIESNSYV  120
REKKDGKDME NSDKLHSQVM LKCYKRRRTN EAVVTDKMTS KFILIFLFLK VFLYKPVFQF  180
YFPNRTFIIS LPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKCYKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E9H01e-139A0A2G5E9H0_AQUCA; Uncharacterized protein
STRINGAquca_010_00339.11e-115(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-18B3 family protein