PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 632aa    MW: 73712.5 Da    PI: 7.7307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1620111199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk  +ps   +++ l +pkkf++ +g  ke s  ++l+d+s+r+W v+l      g++++++GW eF k + +     +vFk+dg+s f  
  Aqcoe6G100700.1.p  20 FFKFILPSCIENRC-LAIPKKFIRIFG--KELSNIVVLKDPSSREWHVEL--GEDEGQIWFQNGWHEFMKYHSITYWHLLVFKYDGNSHF-- 104
                        77777777777776.********6666..45889****************..**********************************9999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v +f+k
  Aqcoe6G100700.1.p 105 NVVIFDK 111
                        9999987 PP
2B349.95.9e-16189281198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f  ++ ps+v    +l+lp  fa+++  +  +   +tl+ ++gr+W+v+    ++  ++ l+kGWk Fv +n Lk++D++ F+l++r++ el
  Aqcoe6G100700.1.p 189 FSVTMRPSHVRVWYMLSLPFAFAKKYVTNDVR--VVTLRVPDGRTWQVRR--AGT-YQVRLSKGWKAFVLENSLKVNDICDFELVDRKRMEL 275
                        455677788888899***********555444..7**************9..555.5789*************************99***** PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v++ r
  Aqcoe6G100700.1.p 276 KVSISR 281
                        **9987 PP
3B358.41.3e-18533623398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         ++ +s+v++s +l +pk+fa+++ ++  ++  +tl+ ++g sW +++  + ++ r  l++GWkeF+ an+L+e D+++F+l++r+  el+v
  Aqcoe6G100700.1.p 533 VTMRRSYVSESYCLNIPKDFADKYLKDAFQG--ITLQLSNGGSWHIRY--QVGDHR-KLGRGWKEFAVANHLQEEDVCIFELVNRNHIELKV 619
                        57889*******************7665565..8888888********..666555.59************************999999999 PP

                        EEE- CS
                 B3  95 kvfr 98 
                         +fr
  Aqcoe6G100700.1.p 620 FIFR 623
                        9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2314112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2117112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1619110No hitNo description
PROSITE profilePS5086312.81619112IPR003340B3 DNA binding domain
PfamPF023626.8E-1420111IPR003340B3 DNA binding domain
SMARTSM010191.2E-1320112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-22183280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-21184281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-20187281No hitNo description
PfamPF023627.1E-14189281IPR003340B3 DNA binding domain
SMARTSM010195.4E-12189283IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676189283IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-23523623IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22526625IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-19529623No hitNo description
SMARTSM010193.2E-13531625IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733531625IPR003340B3 DNA binding domain
PfamPF023622.5E-16533623IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MNEEQCYKEM MEEKEKGYHF FKFILPSCIE NRCLAIPKKF IRIFGKELSN IVVLKDPSSR  60
EWHVELGEDE GQIWFQNGWH EFMKYHSITY WHLLVFKYDG NSHFNVVIFD KTASEIWYPM  120
SCMDDLEEAI NGFGPQIRQE NHEEEFMKVL NRFSLMKVTN ERELRDGSLQ EKENAVEATR  180
GFTSKNPFFS VTMRPSHVRV WYMLSLPFAF AKKYVTNDVR VVTLRVPDGR TWQVRRAGTY  240
QVRLSKGWKA FVLENSLKVN DICDFELVDR KRMELKVSIS RVHQAPTQRK TQSQSPGSNP  300
ICRVKNKEKK NEYAGKRKLT VSKEKDVFEH IEEEEAFVAV DKNDDDDLLY TDCHQYNTSE  360
PIKSSAMNVT SSWPRVENWN LSNGLDTEQG FDPCVHYKKR PRGIVDDRET SSVIQDGCEV  420
FGSIFKNVDE PVNDNLQQMK NKESALELSS SMFCKNVHYN QINSTRLKLA NDEPDRNNQE  480
RGKKESSILM QGLTKGGLHH TVSVARRVMN NQEKERSIIA ARAFTSENPF CIVTMRRSYV  540
SESYCLNIPK DFADKYLKDA FQGITLQLSN GGSWHIRYQV GDHRKLGRGW KEFAVANHLQ  600
EEDVCIFELV NRNHIELKVF IFRVRSLQHN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1916562416144B3 domain-containing transcription factor VRN1
4i1k_B7e-1916562416144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-25B3 family protein